Results 81 - 100 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 141739 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 123606 | 0.69 | 0.468005 |
Target: 5'- gCCUGUCUCgcggGGCcGGGGCCGCgUUGAg -3' miRNA: 3'- aGGAUAGGGa---CCGcCUCCGGCG-GGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 166746 | 0.69 | 0.450485 |
Target: 5'- gCgUGUCCCc-GUGGAGGaCCGCCCa- -3' miRNA: 3'- aGgAUAGGGacCGCCUCC-GGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 88534 | 0.69 | 0.4592 |
Target: 5'- cUCCUgguAUCCCUGGUauggagccugGGGGGCCGgcggcuCCUGGu -3' miRNA: 3'- -AGGA---UAGGGACCG----------CCUCCGGC------GGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 22461 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 16323 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 13254 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 25530 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 19392 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 28599 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 31668 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 34737 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 61839 | 0.71 | 0.376433 |
Target: 5'- cCCgggUGUCCCgcucgcGGUGGAGGUgGCUCGAg -3' miRNA: 3'- aGG---AUAGGGa-----CCGCCUCCGgCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 54048 | 0.71 | 0.346261 |
Target: 5'- cCCUGUCCa-GGCuccccucGAGGCCGCCCu- -3' miRNA: 3'- aGGAUAGGgaCCGc------CUCCGGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 61699 | 0.72 | 0.317861 |
Target: 5'- gCCUA-CCUgcgGGCGGAGGCCGaggCCGu -3' miRNA: 3'- aGGAUaGGGa--CCGCCUCCGGCg--GGCu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 150610 | 0.73 | 0.266414 |
Target: 5'- cCC--UCCCgGGCGGuGGGCgGCCCGGg -3' miRNA: 3'- aGGauAGGGaCCGCC-UCCGgCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 73371 | 0.73 | 0.277991 |
Target: 5'- cCCUucucAUCCCaccUGGCGGAGGUCGucuccacCCCGAc -3' miRNA: 3'- aGGA----UAGGG---ACCGCCUCCGGC-------GGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 137239 | 0.74 | 0.221915 |
Target: 5'- gCCUGUgugCCCgggGGUGGAGGCugCGCCUGAg -3' miRNA: 3'- aGGAUA---GGGa--CCGCCUCCG--GCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 71268 | 0.75 | 0.197435 |
Target: 5'- uUCCUacaGUCgaugCUGGCGGuGGCCGCCCa- -3' miRNA: 3'- -AGGA---UAGg---GACCGCCuCCGGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 62572 | 0.76 | 0.179579 |
Target: 5'- -gCUG-CgCCUGGaaaaGGAGGCCGCCCGGa -3' miRNA: 3'- agGAUaG-GGACCg---CCUCCGGCGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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