miRNA display CGI


Results 61 - 80 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 106140 0.67 0.569734
Target:  5'- aCCgg-CCgUGGUGG-GGaCGCCCGAc -3'
miRNA:   3'- aGGauaGGgACCGCCuCCgGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 159111 0.67 0.579316
Target:  5'- aUUCUGUgCCgGGCGcugcgcGAGGCCGUCCu- -3'
miRNA:   3'- -AGGAUAgGGaCCGC------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 144622 0.67 0.588931
Target:  5'- cCCUAcaggcUCCCaaGGCGGGGGUUggGCCCa- -3'
miRNA:   3'- aGGAU-----AGGGa-CCGCCUCCGG--CGGGcu -5'
33308 3' -62.9 NC_007605.1 + 140620 0.67 0.550695
Target:  5'- aCCcagCCCUGGagcuCGGGGGCgGCCgGGu -3'
miRNA:   3'- aGGauaGGGACC----GCCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38520 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39644 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 135788 0.66 0.60824
Target:  5'- gCCUGccccUCCCUcgagaacccaaGGUGGAGGCucugcaCGCCUGGc -3'
miRNA:   3'- aGGAU----AGGGA-----------CCGCCUCCG------GCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 39519 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39394 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39019 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 159996 0.66 0.641185
Target:  5'- cUCCggccgCCCcgGGCccgGGAccgcgcccuccucugGGCCGCCCGGc -3'
miRNA:   3'- -AGGaua--GGGa-CCG---CCU---------------CCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 39269 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39144 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38770 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 34031 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 38645 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 136482 0.66 0.627614
Target:  5'- uUCCUAcggUCCUGGggcCGGAgcGGUCGCCCc- -3'
miRNA:   3'- -AGGAUa--GGGACC---GCCU--CCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 38270 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38395 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 30962 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.