miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 56534 1.08 0.000915
Target:  5'- cUCCUAUCCCUGGCGGAGGCCGCCCGAa -3'
miRNA:   3'- -AGGAUAGGGACCGCCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 62572 0.76 0.179579
Target:  5'- -gCUG-CgCCUGGaaaaGGAGGCCGCCCGGa -3'
miRNA:   3'- agGAUaG-GGACCg---CCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 71268 0.75 0.197435
Target:  5'- uUCCUacaGUCgaugCUGGCGGuGGCCGCCCa- -3'
miRNA:   3'- -AGGA---UAGg---GACCGCCuCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 137239 0.74 0.221915
Target:  5'- gCCUGUgugCCCgggGGUGGAGGCugCGCCUGAg -3'
miRNA:   3'- aGGAUA---GGGa--CCGCCUCCG--GCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 150610 0.73 0.266414
Target:  5'- cCC--UCCCgGGCGGuGGGCgGCCCGGg -3'
miRNA:   3'- aGGauAGGGaCCGCC-UCCGgCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 73371 0.73 0.277991
Target:  5'- cCCUucucAUCCCaccUGGCGGAGGUCGucuccacCCCGAc -3'
miRNA:   3'- aGGA----UAGGG---ACCGCCUCCGGC-------GGGCU- -5'
33308 3' -62.9 NC_007605.1 + 61699 0.72 0.317861
Target:  5'- gCCUA-CCUgcgGGCGGAGGCCGaggCCGu -3'
miRNA:   3'- aGGAUaGGGa--CCGCCUCCGGCg--GGCu -5'
33308 3' -62.9 NC_007605.1 + 54048 0.71 0.346261
Target:  5'- cCCUGUCCa-GGCuccccucGAGGCCGCCCu- -3'
miRNA:   3'- aGGAUAGGgaCCGc------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 61839 0.71 0.376433
Target:  5'- cCCgggUGUCCCgcucgcGGUGGAGGUgGCUCGAg -3'
miRNA:   3'- aGG---AUAGGGa-----CCGCCUCCGgCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 34737 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 28599 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 13254 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 16323 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 22461 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 31668 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 19392 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 25530 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 166746 0.69 0.450485
Target:  5'- gCgUGUCCCc-GUGGAGGaCCGCCCa- -3'
miRNA:   3'- aGgAUAGGGacCGCCUCC-GGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 88534 0.69 0.4592
Target:  5'- cUCCUgguAUCCCUGGUauggagccugGGGGGCCGgcggcuCCUGGu -3'
miRNA:   3'- -AGGA---UAGGGACCG----------CCUCCGGC------GGGCU- -5'
33308 3' -62.9 NC_007605.1 + 123606 0.69 0.468005
Target:  5'- gCCUGUCUCgcggGGCcGGGGCCGCgUUGAg -3'
miRNA:   3'- aGGAUAGGGa---CCGcCUCCGGCG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.