Results 61 - 80 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 59957 | 0.67 | 0.569734 |
Target: 5'- cUCCc--CCCU-GCGGAaGCCGCCUGGg -3' miRNA: 3'- -AGGauaGGGAcCGCCUcCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 106140 | 0.67 | 0.569734 |
Target: 5'- aCCgg-CCgUGGUGG-GGaCGCCCGAc -3' miRNA: 3'- aGGauaGGgACCGCCuCCgGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 159111 | 0.67 | 0.579316 |
Target: 5'- aUUCUGUgCCgGGCGcugcgcGAGGCCGUCCu- -3' miRNA: 3'- -AGGAUAgGGaCCGC------CUCCGGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 144622 | 0.67 | 0.588931 |
Target: 5'- cCCUAcaggcUCCCaaGGCGGGGGUUggGCCCa- -3' miRNA: 3'- aGGAU-----AGGGa-CCGCCUCCGG--CGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 135788 | 0.66 | 0.60824 |
Target: 5'- gCCUGccccUCCCUcgagaacccaaGGUGGAGGCucugcaCGCCUGGc -3' miRNA: 3'- aGGAU----AGGGA-----------CCGCCUCCG------GCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 63033 | 0.66 | 0.60824 |
Target: 5'- cUCCUcgCUgaGuGCGGcGGCCGUCUGGc -3' miRNA: 3'- -AGGAuaGGgaC-CGCCuCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 159988 | 0.66 | 0.60824 |
Target: 5'- gCCUggCCCUGGUgcgGGGGGCCuGCgaGGa -3' miRNA: 3'- aGGAuaGGGACCG---CCUCCGG-CGggCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 137584 | 0.66 | 0.612111 |
Target: 5'- cUCCUGUCUgggguggcuggcgggCUGGgGGAGGCgGCgCa- -3' miRNA: 3'- -AGGAUAGG---------------GACCgCCUCCGgCGgGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 29123 | 0.66 | 0.625675 |
Target: 5'- gCCUGUCCaccgugggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga---------CCGCCU---CCGG--CGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 30962 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 12549 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 15618 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 18687 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 21756 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 24825 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 27894 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 34031 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 136482 | 0.66 | 0.627614 |
Target: 5'- uUCCUAcggUCCUGGggcCGGAgcGGUCGCCCc- -3' miRNA: 3'- -AGGAUa--GGGACC---GCCU--CCGGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 49673 | 0.66 | 0.627614 |
Target: 5'- cCCgGUCCCa-GCGGAugcGGCgGCCUGAg -3' miRNA: 3'- aGGaUAGGGacCGCCU---CCGgCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 39519 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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