Results 81 - 100 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 38270 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 39519 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 39269 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 39144 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 39019 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 38770 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 38645 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 38520 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 38395 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 39644 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 159996 | 0.66 | 0.641185 |
Target: 5'- cUCCggccgCCCcgGGCccgGGAccgcgcccuccucugGGCCGCCCGGc -3' miRNA: 3'- -AGGaua--GGGa-CCG---CCU---------------CCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 62142 | 0.66 | 0.646999 |
Target: 5'- cCCg--UCCUGGCcuuuGAcGCCGCCCGGc -3' miRNA: 3'- aGGauaGGGACCGc---CUcCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 151282 | 0.66 | 0.660547 |
Target: 5'- gCCg--CCCagGGgGGcaaauugcgugucugGGGCCGCCUGAg -3' miRNA: 3'- aGGauaGGGa-CCgCC---------------UCCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 13779 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 16848 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 19917 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 22986 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 26055 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 32192 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 35261 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home