miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 12549 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 13254 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 13779 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 15186 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 15618 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 16323 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 16848 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 18255 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 18687 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 19392 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 19917 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 21324 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 21756 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 22461 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 22986 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 24393 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 24825 0.66 0.627614
Target:  5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3'
miRNA:   3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 25530 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 26055 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 27462 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.