Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 27894 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 28599 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 29123 | 0.66 | 0.625675 |
Target: 5'- gCCUGUCCaccgugggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga---------CCGCCU---CCGG--CGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 30531 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 30962 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 31668 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 32192 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 33600 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 34031 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 34737 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 35261 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 38270 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 38395 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 38520 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 38645 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 38770 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 38895 | 0.65 | 0.663446 |
Target: 5'- gCCgggGUUCCUGGCgcuccgggggcagcGGGcGGCCGCCgGu -3' miRNA: 3'- aGGa--UAGGGACCG--------------CCU-CCGGCGGgCu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 39019 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 39144 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 39269 | 0.66 | 0.637308 |
Target: 5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3' miRNA: 3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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