miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 39394 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39519 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39644 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 49673 0.66 0.627614
Target:  5'- cCCgGUCCCa-GCGGAugcGGCgGCCUGAg -3'
miRNA:   3'- aGGaUAGGGacCGCCU---CCGgCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 50738 0.67 0.550695
Target:  5'- cCCg--CCCUGGggucCGGcuuGGCCGCCCc- -3'
miRNA:   3'- aGGauaGGGACC----GCCu--CCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 54048 0.71 0.346261
Target:  5'- cCCUGUCCa-GGCuccccucGAGGCCGCCCu- -3'
miRNA:   3'- aGGAUAGGgaCCGc------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 56534 1.08 0.000915
Target:  5'- cUCCUAUCCCUGGCGGAGGCCGCCCGAa -3'
miRNA:   3'- -AGGAUAGGGACCGCCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 59442 0.67 0.560192
Target:  5'- cCUUAUCUCUcGGCGGcuGCCGCCg-- -3'
miRNA:   3'- aGGAUAGGGA-CCGCCucCGGCGGgcu -5'
33308 3' -62.9 NC_007605.1 + 59957 0.67 0.569734
Target:  5'- cUCCc--CCCU-GCGGAaGCCGCCUGGg -3'
miRNA:   3'- -AGGauaGGGAcCGCCUcCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 61511 0.68 0.494922
Target:  5'- cUCCg--CCCgcaGGU--AGGCCGCCCGGg -3'
miRNA:   3'- -AGGauaGGGa--CCGccUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 61699 0.72 0.317861
Target:  5'- gCCUA-CCUgcgGGCGGAGGCCGaggCCGu -3'
miRNA:   3'- aGGAUaGGGa--CCGCCUCCGGCg--GGCu -5'
33308 3' -62.9 NC_007605.1 + 61839 0.71 0.376433
Target:  5'- cCCgggUGUCCCgcucgcGGUGGAGGUgGCUCGAg -3'
miRNA:   3'- aGG---AUAGGGa-----CCGCCUCCGgCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 62142 0.66 0.646999
Target:  5'- cCCg--UCCUGGCcuuuGAcGCCGCCCGGc -3'
miRNA:   3'- aGGauaGGGACCGc---CUcCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 62572 0.76 0.179579
Target:  5'- -gCUG-CgCCUGGaaaaGGAGGCCGCCCGGa -3'
miRNA:   3'- agGAUaG-GGACCg---CCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 63004 0.68 0.485869
Target:  5'- gCCac-CCCUGGCagagguggacgGGGGGCuCGCCCGc -3'
miRNA:   3'- aGGauaGGGACCG-----------CCUCCG-GCGGGCu -5'
33308 3' -62.9 NC_007605.1 + 63033 0.66 0.60824
Target:  5'- cUCCUcgCUgaGuGCGGcGGCCGUCUGGc -3'
miRNA:   3'- -AGGAuaGGgaC-CGCCuCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 71268 0.75 0.197435
Target:  5'- uUCCUacaGUCgaugCUGGCGGuGGCCGCCCa- -3'
miRNA:   3'- -AGGA---UAGg---GACCGCCuCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 73371 0.73 0.277991
Target:  5'- cCCUucucAUCCCaccUGGCGGAGGUCGucuccacCCCGAc -3'
miRNA:   3'- aGGA----UAGGG---ACCGCCUCCGGC-------GGGCU- -5'
33308 3' -62.9 NC_007605.1 + 88534 0.69 0.4592
Target:  5'- cUCCUgguAUCCCUGGUauggagccugGGGGGCCGgcggcuCCUGGu -3'
miRNA:   3'- -AGGA---UAGGGACCG----------CCUCCGGC------GGGCU- -5'
33308 3' -62.9 NC_007605.1 + 106140 0.67 0.569734
Target:  5'- aCCgg-CCgUGGUGG-GGaCGCCCGAc -3'
miRNA:   3'- aGGauaGGgACCGCCuCCgGCGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.