miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 166746 0.69 0.450485
Target:  5'- gCgUGUCCCc-GUGGAGGaCCGCCCa- -3'
miRNA:   3'- aGgAUAGGGacCGCCUCC-GGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 161961 0.67 0.550695
Target:  5'- cCCUGUCCCcaGCGG-GGCCaGCgCGGa -3'
miRNA:   3'- aGGAUAGGGacCGCCuCCGG-CGgGCU- -5'
33308 3' -62.9 NC_007605.1 + 161135 0.68 0.522522
Target:  5'- ---------cGGCGGAGGCCGCUCGGg -3'
miRNA:   3'- aggauagggaCCGCCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 159996 0.66 0.641185
Target:  5'- cUCCggccgCCCcgGGCccgGGAccgcgcccuccucugGGCCGCCCGGc -3'
miRNA:   3'- -AGGaua--GGGa-CCG---CCU---------------CCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 159988 0.66 0.60824
Target:  5'- gCCUggCCCUGGUgcgGGGGGCCuGCgaGGa -3'
miRNA:   3'- aGGAuaGGGACCG---CCUCCGG-CGggCU- -5'
33308 3' -62.9 NC_007605.1 + 159111 0.67 0.579316
Target:  5'- aUUCUGUgCCgGGCGcugcgcGAGGCCGUCCu- -3'
miRNA:   3'- -AGGAUAgGGaCCGC------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 154692 0.67 0.550695
Target:  5'- cUCCUGcCuCCUGGC---GGCCGCCCa- -3'
miRNA:   3'- -AGGAUaG-GGACCGccuCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 151282 0.66 0.660547
Target:  5'- gCCg--CCCagGGgGGcaaauugcgugucugGGGCCGCCUGAg -3'
miRNA:   3'- aGGauaGGGa-CCgCC---------------UCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 150610 0.73 0.266414
Target:  5'- cCC--UCCCgGGCGGuGGGCgGCCCGGg -3'
miRNA:   3'- aGGauAGGGaCCGCC-UCCGgCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 144622 0.67 0.588931
Target:  5'- cCCUAcaggcUCCCaaGGCGGGGGUUggGCCCa- -3'
miRNA:   3'- aGGAU-----AGGGa-CCGCCUCCGG--CGGGcu -5'
33308 3' -62.9 NC_007605.1 + 143064 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142962 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142860 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142758 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142657 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142555 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142453 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142351 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142249 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 142147 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.