Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 142045 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141943 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141841 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141739 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141638 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141536 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141434 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141332 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141230 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141128 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141026 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 140924 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 140822 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 140720 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 140620 | 0.67 | 0.550695 |
Target: 5'- aCCcagCCCUGGagcuCGGGGGCgGCCgGGu -3' miRNA: 3'- aGGauaGGGACC----GCCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 137584 | 0.66 | 0.612111 |
Target: 5'- cUCCUGUCUgggguggcuggcgggCUGGgGGAGGCgGCgCa- -3' miRNA: 3'- -AGGAUAGG---------------GACCgCCUCCGgCGgGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 137239 | 0.74 | 0.221915 |
Target: 5'- gCCUGUgugCCCgggGGUGGAGGCugCGCCUGAg -3' miRNA: 3'- aGGAUA---GGGa--CCGCCUCCG--GCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 136482 | 0.66 | 0.627614 |
Target: 5'- uUCCUAcggUCCUGGggcCGGAgcGGUCGCCCc- -3' miRNA: 3'- -AGGAUa--GGGACC---GCCU--CCGGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 135788 | 0.66 | 0.60824 |
Target: 5'- gCCUGccccUCCCUcgagaacccaaGGUGGAGGCucugcaCGCCUGGc -3' miRNA: 3'- aGGAU----AGGGA-----------CCGCCUCCG------GCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 123606 | 0.69 | 0.468005 |
Target: 5'- gCCUGUCUCgcggGGCcGGGGCCGCgUUGAg -3' miRNA: 3'- aGGAUAGGGa---CCGcCUCCGGCG-GGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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