Results 81 - 100 of 101 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 27894 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 27462 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 26055 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 25530 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 24825 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 24393 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 22986 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 22461 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 21756 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 21324 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 19917 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 19392 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 18687 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 18255 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 16848 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 16323 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 15618 | 0.66 | 0.627614 |
Target: 5'- gCCUAggCCCggGGaaguggaGGGGGaUCGCCCGGg -3' miRNA: 3'- aGGAUa-GGGa-CCg------CCUCC-GGCGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 15186 | 0.67 | 0.554488 |
Target: 5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3' miRNA: 3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 13779 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
|||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 13254 | 0.7 | 0.422386 |
Target: 5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3' miRNA: 3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home