Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33308 | 3' | -62.9 | NC_007605.1 | + | 62572 | 0.76 | 0.179579 |
Target: 5'- -gCUG-CgCCUGGaaaaGGAGGCCGCCCGGa -3' miRNA: 3'- agGAUaG-GGACCg---CCUCCGGCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141638 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141739 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142962 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142860 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142758 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142657 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142555 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142453 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142351 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142249 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142147 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 142045 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141943 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 141841 | 0.68 | 0.494922 |
Target: 5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3' miRNA: 3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 61699 | 0.72 | 0.317861 |
Target: 5'- gCCUA-CCUgcgGGCGGAGGCCGaggCCGu -3' miRNA: 3'- aGGAUaGGGa--CCGCCUCCGGCg--GGCu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 73371 | 0.73 | 0.277991 |
Target: 5'- cCCUucucAUCCCaccUGGCGGAGGUCGucuccacCCCGAc -3' miRNA: 3'- aGGA----UAGGG---ACCGCCUCCGGC-------GGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 137239 | 0.74 | 0.221915 |
Target: 5'- gCCUGUgugCCCgggGGUGGAGGCugCGCCUGAg -3' miRNA: 3'- aGGAUA---GGGa--CCGCCUCCG--GCGGGCU- -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 71268 | 0.75 | 0.197435 |
Target: 5'- uUCCUacaGUCgaugCUGGCGGuGGCCGCCCa- -3' miRNA: 3'- -AGGA---UAGg---GACCGCCuCCGGCGGGcu -5' |
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33308 | 3' | -62.9 | NC_007605.1 | + | 13779 | 0.65 | 0.662479 |
Target: 5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3' miRNA: 3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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