miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 33600 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 161961 0.67 0.550695
Target:  5'- cCCUGUCCCcaGCGG-GGCCaGCgCGGa -3'
miRNA:   3'- aGGAUAGGGacCGCCuCCGG-CGgGCU- -5'
33308 3' -62.9 NC_007605.1 + 25530 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 73371 0.73 0.277991
Target:  5'- cCCUucucAUCCCaccUGGCGGAGGUCGucuccacCCCGAc -3'
miRNA:   3'- aGGA----UAGGG---ACCGCCUCCGGC-------GGGCU- -5'
33308 3' -62.9 NC_007605.1 + 137584 0.66 0.612111
Target:  5'- cUCCUGUCUgggguggcuggcgggCUGGgGGAGGCgGCgCa- -3'
miRNA:   3'- -AGGAUAGG---------------GACCgCCUCCGgCGgGcu -5'
33308 3' -62.9 NC_007605.1 + 18255 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 63004 0.68 0.485869
Target:  5'- gCCac-CCCUGGCagagguggacgGGGGGCuCGCCCGc -3'
miRNA:   3'- aGGauaGGGACCG-----------CCUCCG-GCGGGCu -5'
33308 3' -62.9 NC_007605.1 + 137239 0.74 0.221915
Target:  5'- gCCUGUgugCCCgggGGUGGAGGCugCGCCUGAg -3'
miRNA:   3'- aGGAUA---GGGa--CCGCCUCCG--GCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 21324 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 71268 0.75 0.197435
Target:  5'- uUCCUacaGUCgaugCUGGCGGuGGCCGCCCa- -3'
miRNA:   3'- -AGGA---UAGg---GACCGCCuCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 161135 0.68 0.522522
Target:  5'- ---------cGGCGGAGGCCGCUCGGg -3'
miRNA:   3'- aggauagggaCCGCCUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 30531 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 13254 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 22461 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 34737 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 61699 0.72 0.317861
Target:  5'- gCCUA-CCUgcgGGCGGAGGCCGaggCCGu -3'
miRNA:   3'- aGGAUaGGGa--CCGCCUCCGGCg--GGCu -5'
33308 3' -62.9 NC_007605.1 + 151282 0.66 0.660547
Target:  5'- gCCg--CCCagGGgGGcaaauugcgugucugGGGCCGCCUGAg -3'
miRNA:   3'- aGGauaGGGa-CCgCC---------------UCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 29123 0.66 0.625675
Target:  5'- gCCUGUCCaccgugggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga---------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 159111 0.67 0.579316
Target:  5'- aUUCUGUgCCgGGCGcugcgcGAGGCCGUCCu- -3'
miRNA:   3'- -AGGAUAgGGaCCGC------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 15186 0.67 0.554488
Target:  5'- cCCggGUCUCUGGaggacggggacggaGGGGGCCugaaGCCCGGg -3'
miRNA:   3'- aGGa-UAGGGACCg-------------CCUCCGG----CGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.