miRNA display CGI


Results 41 - 60 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 3' -62.9 NC_007605.1 + 31668 0.7 0.422386
Target:  5'- aUCCUGggcucugaagCCCggggaaggGGCGaggaaccggccucuGGGGCCGCCCGGg -3'
miRNA:   3'- -AGGAUa---------GGGa-------CCGC--------------CUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 16848 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 26055 0.65 0.662479
Target:  5'- gCCUGUCCaccguggggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga----------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 29123 0.66 0.625675
Target:  5'- gCCUGUCCaccgugggaggGGUGGAcgaGGCUggGCCCGGg -3'
miRNA:   3'- aGGAUAGGga---------CCGCCU---CCGG--CGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 144622 0.67 0.588931
Target:  5'- cCCUAcaggcUCCCaaGGCGGGGGUUggGCCCa- -3'
miRNA:   3'- aGGAU-----AGGGa-CCGCCUCCGG--CGGGcu -5'
33308 3' -62.9 NC_007605.1 + 159111 0.67 0.579316
Target:  5'- aUUCUGUgCCgGGCGcugcgcGAGGCCGUCCu- -3'
miRNA:   3'- -AGGAUAgGGaCCGC------CUCCGGCGGGcu -5'
33308 3' -62.9 NC_007605.1 + 39644 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 38895 0.65 0.663446
Target:  5'- gCCgggGUUCCUGGCgcuccgggggcagcGGGcGGCCGCCgGu -3'
miRNA:   3'- aGGa--UAGGGACCG--------------CCU-CCGGCGGgCu -5'
33308 3' -62.9 NC_007605.1 + 142962 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39519 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 39394 0.66 0.637308
Target:  5'- gCCgggGUUCCUGGCgcuccGGGGGCaGCCgGGc -3'
miRNA:   3'- aGGa--UAGGGACCG-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 141026 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 143064 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 61511 0.68 0.494922
Target:  5'- cUCCg--CCCgcaGGU--AGGCCGCCCGGg -3'
miRNA:   3'- -AGGauaGGGa--CCGccUCCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 122492 0.68 0.541247
Target:  5'- gUCCUcGUCCCUGGUaaaauGGuGGCUgaaggcugGCCCGu -3'
miRNA:   3'- -AGGA-UAGGGACCG-----CCuCCGG--------CGGGCu -5'
33308 3' -62.9 NC_007605.1 + 140620 0.67 0.550695
Target:  5'- aCCcagCCCUGGagcuCGGGGGCgGCCgGGu -3'
miRNA:   3'- aGGauaGGGACC----GCCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 59957 0.67 0.569734
Target:  5'- cUCCc--CCCU-GCGGAaGCCGCCUGGg -3'
miRNA:   3'- -AGGauaGGGAcCGCCUcCGGCGGGCU- -5'
33308 3' -62.9 NC_007605.1 + 141841 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 141739 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5'
33308 3' -62.9 NC_007605.1 + 141638 0.68 0.494922
Target:  5'- uUCCgg-CCCUGGagcucgGGGGGCgGCCgGGu -3'
miRNA:   3'- -AGGauaGGGACCg-----CCUCCGgCGGgCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.