miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 5' -55.1 NC_007605.1 + 15339 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 24546 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 151713 0.66 0.947968
Target:  5'- uGGCCcugcaaacuGACAcACAGGCcugGcGGGUGGAg- -3'
miRNA:   3'- -CCGGu--------CUGU-UGUCCGa--C-CCCAUCUac -5'
33308 5' -55.1 NC_007605.1 + 30684 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 33753 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 27615 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 18408 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 100942 0.66 0.947968
Target:  5'- uGCCGGGCAggggcgugccgcGCGGGgaaccgGGGG-AGAUGg -3'
miRNA:   3'- cCGGUCUGU------------UGUCCga----CCCCaUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 171174 0.66 0.947968
Target:  5'- gGGUCGGGguCcGCGGGCUccgggggcugcgGGcGGUGGAUGg -3'
miRNA:   3'- -CCGGUCU--GuUGUCCGA------------CC-CCAUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 170114 0.66 0.947968
Target:  5'- gGGUCGGGguCcGCGGGCUccgggggcugcgGGcGGUGGAUGg -3'
miRNA:   3'- -CCGGUCU--GuUGUCCGA------------CC-CCAUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 10875 0.66 0.947968
Target:  5'- cGGCUcccGGACGcuugaGGGC-GGGGUGGAc- -3'
miRNA:   3'- -CCGG---UCUGUug---UCCGaCCCCAUCUac -5'
33308 5' -55.1 NC_007605.1 + 12270 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 169577 0.66 0.947968
Target:  5'- gGGUCGGGguCcGCGGGCUccgggggcugcgGGcGGUGGAUGg -3'
miRNA:   3'- -CCGGUCU--GuUGUCCGA------------CC-CCAUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 21477 0.66 0.947968
Target:  5'- gGGgaGGGgGGgAGGCUGGGGUGGc-- -3'
miRNA:   3'- -CCggUCUgUUgUCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 132031 0.66 0.947538
Target:  5'- gGGCCAcacucccGGCuACgGGGCUucGGGGUAGGg- -3'
miRNA:   3'- -CCGGU-------CUGuUG-UCCGA--CCCCAUCUac -5'
33308 5' -55.1 NC_007605.1 + 46992 0.66 0.945349
Target:  5'- uGGCCAGGCcguuGuuggauaucacaaacACGGGCgaggaGGGGUAGuUGc -3'
miRNA:   3'- -CCGGUCUG----U---------------UGUCCGa----CCCCAUCuAC- -5'
33308 5' -55.1 NC_007605.1 + 170637 0.66 0.943556
Target:  5'- gGGUCGGGguCcGCGGGCUccggggcugcgGGcGGUGGAUGg -3'
miRNA:   3'- -CCGGUCU--GuUGUCCGA-----------CC-CCAUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 160068 0.66 0.943556
Target:  5'- cGGCCAuGcuaucgguGCAACgGGGCagGGGGaGGGUGg -3'
miRNA:   3'- -CCGGU-C--------UGUUG-UCCGa-CCCCaUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 78178 0.66 0.938907
Target:  5'- gGGCUGGugGcAUuugGGGUUGGGGUAGu-- -3'
miRNA:   3'- -CCGGUCugU-UG---UCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 126365 0.66 0.938907
Target:  5'- uGGCCGGGC--CGGGCccccgGGGGUGu--- -3'
miRNA:   3'- -CCGGUCUGuuGUCCGa----CCCCAUcuac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.