miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33308 5' -55.1 NC_007605.1 + 39964 0.66 0.934019
Target:  5'- uGCCGG-CuGgGGGCUGGGGUcccgGGAc- -3'
miRNA:   3'- cCGGUCuGuUgUCCGACCCCA----UCUac -5'
33308 5' -55.1 NC_007605.1 + 110219 0.67 0.891077
Target:  5'- gGGUCGGAuCggUcaaaucccaugucaGGGUUGGGGUAGggGa -3'
miRNA:   3'- -CCGGUCU-GuuG--------------UCCGACCCCAUCuaC- -5'
33308 5' -55.1 NC_007605.1 + 52336 0.67 0.893089
Target:  5'- cGGCCAGAgGGC-GGCUcGGGUAu--- -3'
miRNA:   3'- -CCGGUCUgUUGuCCGAcCCCAUcuac -5'
33308 5' -55.1 NC_007605.1 + 50549 0.67 0.899647
Target:  5'- aGCCGGACcccagGGCGGGUgccUGGGGgaugGGAa- -3'
miRNA:   3'- cCGGUCUG-----UUGUCCG---ACCCCa---UCUac -5'
33308 5' -55.1 NC_007605.1 + 121954 0.67 0.912061
Target:  5'- uGGCCuGGGCAauAUAGGCcaUGGGGgacaucuuGAUGu -3'
miRNA:   3'- -CCGG-UCUGU--UGUCCG--ACCCCau------CUAC- -5'
33308 5' -55.1 NC_007605.1 + 151665 0.67 0.912061
Target:  5'- gGGCCaaacAGGCGGCGGGgcCUGGGuaGUAGGg- -3'
miRNA:   3'- -CCGG----UCUGUUGUCC--GACCC--CAUCUac -5'
33308 5' -55.1 NC_007605.1 + 61009 0.67 0.917911
Target:  5'- cGGCCAGAgAGCGGGUuuUGGGcagcucguUGGAg- -3'
miRNA:   3'- -CCGGUCUgUUGUCCG--ACCCc-------AUCUac -5'
33308 5' -55.1 NC_007605.1 + 153767 0.66 0.923521
Target:  5'- gGGCCAca-AACAGGCUccGGGUGGuGUGg -3'
miRNA:   3'- -CCGGUcugUUGUCCGAc-CCCAUC-UAC- -5'
33308 5' -55.1 NC_007605.1 + 150300 0.66 0.932505
Target:  5'- cGGCCAGAagAGCgcaaguccaagucuGGuGCUGGGGccGAUGu -3'
miRNA:   3'- -CCGGUCUg-UUG--------------UC-CGACCCCauCUAC- -5'
33308 5' -55.1 NC_007605.1 + 37345 0.68 0.8863
Target:  5'- cGGUCuucaucagGGACAAgGGGCUGGGGa----- -3'
miRNA:   3'- -CCGG--------UCUGUUgUCCGACCCCaucuac -5'
33308 5' -55.1 NC_007605.1 + 5097 0.68 0.885609
Target:  5'- aGGCCAGAUAcguucucGguGGCcuUGGGGgagcuggGGGUGc -3'
miRNA:   3'- -CCGGUCUGU-------UguCCG--ACCCCa------UCUAC- -5'
33308 5' -55.1 NC_007605.1 + 136551 0.68 0.879285
Target:  5'- cGCCGGGCccGCGGGC-GGGGacccGGGUGc -3'
miRNA:   3'- cCGGUCUGu-UGUCCGaCCCCa---UCUAC- -5'
33308 5' -55.1 NC_007605.1 + 50869 0.77 0.390419
Target:  5'- uGGCCGGGCuuguAGgGGGCUGaGGGUGGAa- -3'
miRNA:   3'- -CCGGUCUG----UUgUCCGAC-CCCAUCUac -5'
33308 5' -55.1 NC_007605.1 + 91322 0.75 0.518933
Target:  5'- gGGCCGGGuCAAguGGCUGGGGcaccgGGGcUGg -3'
miRNA:   3'- -CCGGUCU-GUUguCCGACCCCa----UCU-AC- -5'
33308 5' -55.1 NC_007605.1 + 67994 0.74 0.548729
Target:  5'- cGGCCAG-CGACAGGCUGaGGaacgagcAGAUGa -3'
miRNA:   3'- -CCGGUCuGUUGUCCGAC-CCca-----UCUAC- -5'
33308 5' -55.1 NC_007605.1 + 138402 0.72 0.661004
Target:  5'- aGCCAGACAcgGCGGGUgGGGGaAGGa- -3'
miRNA:   3'- cCGGUCUGU--UGUCCGaCCCCaUCUac -5'
33308 5' -55.1 NC_007605.1 + 77947 0.71 0.711727
Target:  5'- gGGCCGGugGcAUuugGGGUUGGGGUAGu-- -3'
miRNA:   3'- -CCGGUCugU-UG---UCCGACCCCAUCuac -5'
33308 5' -55.1 NC_007605.1 + 71118 0.71 0.741415
Target:  5'- gGGUCAGAgaggcCAGgGGGCUGGGcaAGGUGa -3'
miRNA:   3'- -CCGGUCU-----GUUgUCCGACCCcaUCUAC- -5'
33308 5' -55.1 NC_007605.1 + 134904 0.7 0.797944
Target:  5'- cGGCCAGGCAGaggaAGGCcacaaagaGGGGgcGAa- -3'
miRNA:   3'- -CCGGUCUGUUg---UCCGa-------CCCCauCUac -5'
33308 5' -55.1 NC_007605.1 + 148501 0.68 0.864595
Target:  5'- uGGUauGGCA-CAGGCUGGGGgugagucuggGGAUGu -3'
miRNA:   3'- -CCGguCUGUuGUCCGACCCCa---------UCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.