miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 3' -48.1 NC_007605.1 + 106047 0.66 0.999849
Target:  5'- cGUCGGGAGUcuCGGUGGAAuAggUGa -3'
miRNA:   3'- cCGGCUCUCGcuGCUACCUUuUaaAC- -5'
33309 3' -48.1 NC_007605.1 + 62046 0.66 0.999849
Target:  5'- gGGCCaGGGGCaGCGAggccaccacgcUGGAAAGUg-- -3'
miRNA:   3'- -CCGGcUCUCGcUGCU-----------ACCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 10965 0.66 0.999849
Target:  5'- cGGCCG--GGUGACuGGUGGggGGc--- -3'
miRNA:   3'- -CCGGCucUCGCUG-CUACCuuUUaaac -5'
33309 3' -48.1 NC_007605.1 + 169559 0.66 0.999849
Target:  5'- cGGCgGGcGGGCGGCGggGGGu------ -3'
miRNA:   3'- -CCGgCU-CUCGCUGCuaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 170096 0.66 0.999849
Target:  5'- cGGCgGGcGGGCGGCGggGGGu------ -3'
miRNA:   3'- -CCGgCU-CUCGCUGCuaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 170619 0.66 0.999849
Target:  5'- cGGCgGGcGGGCGGCGggGGGu------ -3'
miRNA:   3'- -CCGgCU-CUCGCUGCuaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 171156 0.66 0.999849
Target:  5'- cGGCgGGcGGGCGGCGggGGGu------ -3'
miRNA:   3'- -CCGgCU-CUCGCUGCuaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 120151 0.66 0.999849
Target:  5'- uGGUCGAuGAacaaGUGGCGGUGGAAc----- -3'
miRNA:   3'- -CCGGCU-CU----CGCUGCUACCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 26022 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 22953 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 19884 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 13746 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 50869 0.66 0.999805
Target:  5'- uGGCCGggcuuguagGGGGCuGAgGGUGGAAAc---- -3'
miRNA:   3'- -CCGGC---------UCUCG-CUgCUACCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 16815 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 29091 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 56899 0.66 0.999805
Target:  5'- aGGCCGGGucguaGACGAUGGccuGUUccUGg -3'
miRNA:   3'- -CCGGCUCucg--CUGCUACCuuuUAA--AC- -5'
33309 3' -48.1 NC_007605.1 + 35228 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 32159 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 55077 0.66 0.999805
Target:  5'- aGGCa-GGAGCGGCGAgcgcGGAGGc---- -3'
miRNA:   3'- -CCGgcUCUCGCUGCUa---CCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 36569 0.66 0.999805
Target:  5'- gGGUggUGGGGGUGGUGGUGGggGGggUGg -3'
miRNA:   3'- -CCG--GCUCUCGCUGCUACCuuUUaaAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.