miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 3' -48.1 NC_007605.1 + 26022 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 115399 0.66 0.999752
Target:  5'- aGGCCGAGcagggacuGGCGGCacuGUGGggGu---- -3'
miRNA:   3'- -CCGGCUC--------UCGCUGc--UACCuuUuaaac -5'
33309 3' -48.1 NC_007605.1 + 133138 0.66 0.999604
Target:  5'- aGGCCGGuGGUGGaGGUGGGGAGggucuUUUGg -3'
miRNA:   3'- -CCGGCUcUCGCUgCUACCUUUU-----AAAC- -5'
33309 3' -48.1 NC_007605.1 + 29091 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 35228 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 55077 0.66 0.999805
Target:  5'- aGGCa-GGAGCGGCGAgcgcGGAGGc---- -3'
miRNA:   3'- -CCGgcUCUCGCUGCUa---CCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 22953 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 168476 0.67 0.999065
Target:  5'- -uCCaGAGAGCGAUGAgcaGGAGGGUg-- -3'
miRNA:   3'- ccGG-CUCUCGCUGCUa--CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 61357 0.67 0.999065
Target:  5'- cGGCCGcgggaGGGGgGACGAUG-AAGAUg-- -3'
miRNA:   3'- -CCGGC-----UCUCgCUGCUACcUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 61009 0.67 0.998836
Target:  5'- cGGCCaGAGAGCGGguuuugggcagcuCGuUGGAGAGg--- -3'
miRNA:   3'- -CCGG-CUCUCGCU-------------GCuACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 47330 0.67 0.998859
Target:  5'- -uCCGAG-GCGGCGccGUGGAAGAa--- -3'
miRNA:   3'- ccGGCUCuCGCUGC--UACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 100767 0.67 0.998859
Target:  5'- cGGCagucuuGAGCGugGcAUGGAGGGUggUGg -3'
miRNA:   3'- -CCGgcu---CUCGCugC-UACCUUUUAa-AC- -5'
33309 3' -48.1 NC_007605.1 + 88378 0.67 0.999383
Target:  5'- cGGCUGuguGGGCGAC-AUGGAAc----- -3'
miRNA:   3'- -CCGGCu--CUCGCUGcUACCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 121046 0.67 0.999238
Target:  5'- aGGCUGAGAGUG-CGG-GGAAu----- -3'
miRNA:   3'- -CCGGCUCUCGCuGCUaCCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 152466 0.67 0.998859
Target:  5'- -cCCGGGGGCcAUGGUGGAGAGc--- -3'
miRNA:   3'- ccGGCUCUCGcUGCUACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 154463 0.68 0.998615
Target:  5'- aGGCCGAGGGC-AUGGgcaGGAuaAAGUUUu -3'
miRNA:   3'- -CCGGCUCUCGcUGCUa--CCU--UUUAAAc -5'
33309 3' -48.1 NC_007605.1 + 161506 0.68 0.998328
Target:  5'- gGGCCG-GGGCGugGAcaGGAAc----- -3'
miRNA:   3'- -CCGGCuCUCGCugCUa-CCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 99030 0.68 0.998328
Target:  5'- --gCGAGAGCGACGA-GGAu------ -3'
miRNA:   3'- ccgGCUCUCGCUGCUaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 139464 0.68 0.998328
Target:  5'- gGGgaGGGGGgGugGGUacgGGAGAGUUUGg -3'
miRNA:   3'- -CCggCUCUCgCugCUA---CCUUUUAAAC- -5'
33309 3' -48.1 NC_007605.1 + 49883 0.68 0.997992
Target:  5'- -uCCG-GGGCGGCGGUGGAu------ -3'
miRNA:   3'- ccGGCuCUCGCUGCUACCUuuuaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.