Results 41 - 60 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33309 | 3' | -48.1 | NC_007605.1 | + | 45556 | 0.68 | 0.998615 |
Target: 5'- uGGCCGGGgacuggccGGUGAgGAUGGAu------ -3' miRNA: 3'- -CCGGCUC--------UCGCUgCUACCUuuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 154463 | 0.68 | 0.998615 |
Target: 5'- aGGCCGAGGGC-AUGGgcaGGAuaAAGUUUu -3' miRNA: 3'- -CCGGCUCUCGcUGCUa--CCU--UUUAAAc -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 99030 | 0.68 | 0.998328 |
Target: 5'- --gCGAGAGCGACGA-GGAu------ -3' miRNA: 3'- ccgGCUCUCGCUGCUaCCUuuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 18958 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 15889 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 28164 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 22027 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 25096 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 12820 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 31233 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 34302 | 0.69 | 0.996036 |
Target: 5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3' miRNA: 3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 61533 | 0.69 | 0.997151 |
Target: 5'- cGGCCGAGuaugagcaGGUGGCGggGGAc------ -3' miRNA: 3'- -CCGGCUC--------UCGCUGCuaCCUuuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 50158 | 0.69 | 0.996036 |
Target: 5'- aGCUGGGAgGCGGCgGAUGGggGu---- -3' miRNA: 3'- cCGGCUCU-CGCUG-CUACCuuUuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 84156 | 0.69 | 0.996036 |
Target: 5'- aGCUGAaAGCGACGA-GGAGGAa--- -3' miRNA: 3'- cCGGCUcUCGCUGCUaCCUUUUaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 129250 | 0.69 | 0.996631 |
Target: 5'- gGGCCGAGcacAG-GGCGGUGGAcagcagUUGg -3' miRNA: 3'- -CCGGCUC---UCgCUGCUACCUuuua--AAC- -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 105515 | 0.69 | 0.997151 |
Target: 5'- uGGCgGAGGGCaGGCGcgGGAc------ -3' miRNA: 3'- -CCGgCUCUCG-CUGCuaCCUuuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 2057 | 0.69 | 0.996036 |
Target: 5'- aGGCCGAgcgcgGAGCGugGGUcaGAGAGUa-- -3' miRNA: 3'- -CCGGCU-----CUCGCugCUAc-CUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 17773 | 0.7 | 0.990411 |
Target: 5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3' miRNA: 3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 14704 | 0.7 | 0.990411 |
Target: 5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3' miRNA: 3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 8224 | 0.7 | 0.992735 |
Target: 5'- cGCUGAGAGC-ACGGUGGGc------ -3' miRNA: 3'- cCGGCUCUCGcUGCUACCUuuuaaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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