Results 1 - 20 of 84 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33309 | 3' | -48.1 | NC_007605.1 | + | 56713 | 1.12 | 0.012803 |
Target: 5'- uGGCCGAGAGCGACGAUGGAAAAUUUGa -3' miRNA: 3'- -CCGGCUCUCGCUGCUACCUUUUAAAC- -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 63606 | 0.82 | 0.57859 |
Target: 5'- cGCCGGGGGUGGCGGUGGAGu----- -3' miRNA: 3'- cCGGCUCUCGCUGCUACCUUuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 157465 | 0.77 | 0.832108 |
Target: 5'- gGGCUGGGGGCGAUGGacugcUGGggGGUg-- -3' miRNA: 3'- -CCGGCUCUCGCUGCU-----ACCuuUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 58173 | 0.76 | 0.865198 |
Target: 5'- aGGCCG-GAGaCGACGgcGGGGAGUUg- -3' miRNA: 3'- -CCGGCuCUC-GCUGCuaCCUUUUAAac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 40295 | 0.76 | 0.879666 |
Target: 5'- cGGCCGAGccaccaggggcccGGCGGgGGUGGggGGUg-- -3' miRNA: 3'- -CCGGCUC-------------UCGCUgCUACCuuUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 63096 | 0.75 | 0.920126 |
Target: 5'- cGCCGGGGGUGGCaGUGGAGGGg--- -3' miRNA: 3'- cCGGCUCUCGCUGcUACCUUUUaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 136807 | 0.74 | 0.941469 |
Target: 5'- aGGCCGgaggGGGGUGugGGUGGggGu---- -3' miRNA: 3'- -CCGGC----UCUCGCugCUACCuuUuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 156125 | 0.73 | 0.954781 |
Target: 5'- uGGUgGGGGGUGACGAggaUGGAAAGg--- -3' miRNA: 3'- -CCGgCUCUCGCUGCU---ACCUUUUaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 62010 | 0.73 | 0.958719 |
Target: 5'- uGGCCGGGAugGCGGCagaGAUGGAGGc---- -3' miRNA: 3'- -CCGGCUCU--CGCUG---CUACCUUUuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 64487 | 0.71 | 0.981833 |
Target: 5'- aGGCCggagauuGAGAGUGAC-AUGGAGGuGUUUGa -3' miRNA: 3'- -CCGG-------CUCUCGCUGcUACCUUU-UAAAC- -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 170266 | 0.71 | 0.984046 |
Target: 5'- aGCgGGGGGCGGCGcgGGAGc----- -3' miRNA: 3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 170788 | 0.71 | 0.984046 |
Target: 5'- aGCgGGGGGCGGCGcgGGAGc----- -3' miRNA: 3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 171326 | 0.71 | 0.984046 |
Target: 5'- aGCgGGGGGCGGCGcgGGAGc----- -3' miRNA: 3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 169728 | 0.71 | 0.984046 |
Target: 5'- aGCgGGGGGCGGCGcgGGAGc----- -3' miRNA: 3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 52577 | 0.71 | 0.98754 |
Target: 5'- aGGCCGAGuccuGCGuagaACGAUGGGGc----- -3' miRNA: 3'- -CCGGCUCu---CGC----UGCUACCUUuuaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 54240 | 0.7 | 0.989048 |
Target: 5'- aGGCCGAG-GCGGcCGAgguccgggcgcUGGAAGAg--- -3' miRNA: 3'- -CCGGCUCuCGCU-GCU-----------ACCUUUUaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 107375 | 0.7 | 0.989048 |
Target: 5'- aGGCCGAGAGaaaGACGugcuuguaGGAAAGg--- -3' miRNA: 3'- -CCGGCUCUCg--CUGCua------CCUUUUaaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 106746 | 0.7 | 0.989048 |
Target: 5'- -aCCGcAGGGCGGUGGUGGgcGAUUUGg -3' miRNA: 3'- ccGGC-UCUCGCUGCUACCuuUUAAAC- -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 26980 | 0.7 | 0.990411 |
Target: 5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3' miRNA: 3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5' |
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33309 | 3' | -48.1 | NC_007605.1 | + | 30049 | 0.7 | 0.990411 |
Target: 5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3' miRNA: 3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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