miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 3' -48.1 NC_007605.1 + 2057 0.69 0.996036
Target:  5'- aGGCCGAgcgcgGAGCGugGGUcaGAGAGUa-- -3'
miRNA:   3'- -CCGGCU-----CUCGCugCUAc-CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 8224 0.7 0.992735
Target:  5'- cGCUGAGAGC-ACGGUGGGc------ -3'
miRNA:   3'- cCGGCUCUCGcUGCUACCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 10965 0.66 0.999849
Target:  5'- cGGCCG--GGUGACuGGUGGggGGc--- -3'
miRNA:   3'- -CCGGCucUCGCUG-CUACCuuUUaaac -5'
33309 3' -48.1 NC_007605.1 + 12820 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 13746 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 14704 0.7 0.990411
Target:  5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3'
miRNA:   3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 15889 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 16815 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 17773 0.7 0.990411
Target:  5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3'
miRNA:   3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 18958 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 19884 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 20842 0.7 0.990411
Target:  5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3'
miRNA:   3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 22027 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 22953 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 23911 0.7 0.990411
Target:  5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3'
miRNA:   3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 25096 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 26022 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 26980 0.7 0.990411
Target:  5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3'
miRNA:   3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 28164 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 29091 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.