miRNA display CGI


Results 21 - 40 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 3' -48.1 NC_007605.1 + 30049 0.7 0.990411
Target:  5'- uGGCgGAGucAGCGACGGUGauGAAGGUg-- -3'
miRNA:   3'- -CCGgCUC--UCGCUGCUAC--CUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 31233 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 32159 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 34302 0.69 0.996036
Target:  5'- gGGCUGAGGGCGACcGUccgggcccGGAGGGUc-- -3'
miRNA:   3'- -CCGGCUCUCGCUGcUA--------CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 35228 0.66 0.999805
Target:  5'- gGGcCCGGGAGCcgugGACGGgcgUGGGAGGc--- -3'
miRNA:   3'- -CC-GGCUCUCG----CUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 36569 0.66 0.999805
Target:  5'- gGGUggUGGGGGUGGUGGUGGggGGggUGg -3'
miRNA:   3'- -CCG--GCUCUCGCUGCUACCuuUUaaAC- -5'
33309 3' -48.1 NC_007605.1 + 40295 0.76 0.879666
Target:  5'- cGGCCGAGccaccaggggcccGGCGGgGGUGGggGGUg-- -3'
miRNA:   3'- -CCGGCUC-------------UCGCUgCUACCuuUUAaac -5'
33309 3' -48.1 NC_007605.1 + 45556 0.68 0.998615
Target:  5'- uGGCCGGGgacuggccGGUGAgGAUGGAu------ -3'
miRNA:   3'- -CCGGCUC--------UCGCUgCUACCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 47330 0.67 0.998859
Target:  5'- -uCCGAG-GCGGCGccGUGGAAGAa--- -3'
miRNA:   3'- ccGGCUCuCGCUGC--UACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 49883 0.68 0.997992
Target:  5'- -uCCG-GGGCGGCGGUGGAu------ -3'
miRNA:   3'- ccGGCuCUCGCUGCUACCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 50158 0.69 0.996036
Target:  5'- aGCUGGGAgGCGGCgGAUGGggGu---- -3'
miRNA:   3'- cCGGCUCU-CGCUG-CUACCuuUuaaac -5'
33309 3' -48.1 NC_007605.1 + 50869 0.66 0.999805
Target:  5'- uGGCCGggcuuguagGGGGCuGAgGGUGGAAAc---- -3'
miRNA:   3'- -CCGGC---------UCUCG-CUgCUACCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 52577 0.71 0.98754
Target:  5'- aGGCCGAGuccuGCGuagaACGAUGGGGc----- -3'
miRNA:   3'- -CCGGCUCu---CGC----UGCUACCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 54240 0.7 0.989048
Target:  5'- aGGCCGAG-GCGGcCGAgguccgggcgcUGGAAGAg--- -3'
miRNA:   3'- -CCGGCUCuCGCU-GCU-----------ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 55077 0.66 0.999805
Target:  5'- aGGCa-GGAGCGGCGAgcgcGGAGGc---- -3'
miRNA:   3'- -CCGgcUCUCGCUGCUa---CCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 56713 1.12 0.012803
Target:  5'- uGGCCGAGAGCGACGAUGGAAAAUUUGa -3'
miRNA:   3'- -CCGGCUCUCGCUGCUACCUUUUAAAC- -5'
33309 3' -48.1 NC_007605.1 + 56899 0.66 0.999805
Target:  5'- aGGCCGGGucguaGACGAUGGccuGUUccUGg -3'
miRNA:   3'- -CCGGCUCucg--CUGCUACCuuuUAA--AC- -5'
33309 3' -48.1 NC_007605.1 + 57806 0.66 0.999685
Target:  5'- uGCUGaAGGGgGGCGAUGGGGc----- -3'
miRNA:   3'- cCGGC-UCUCgCUGCUACCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 58173 0.76 0.865198
Target:  5'- aGGCCG-GAGaCGACGgcGGGGAGUUg- -3'
miRNA:   3'- -CCGGCuCUC-GCUGCuaCCUUUUAAac -5'
33309 3' -48.1 NC_007605.1 + 61009 0.67 0.998836
Target:  5'- cGGCCaGAGAGCGGguuuugggcagcuCGuUGGAGAGg--- -3'
miRNA:   3'- -CCGG-CUCUCGCU-------------GCuACCUUUUaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.