miRNA display CGI


Results 61 - 80 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 3' -48.1 NC_007605.1 + 121046 0.67 0.999238
Target:  5'- aGGCUGAGAGUG-CGG-GGAAu----- -3'
miRNA:   3'- -CCGGCUCUCGCuGCUaCCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 126425 0.66 0.999752
Target:  5'- aGCUGGaaucGAGCGGgGGUGGAGGGg--- -3'
miRNA:   3'- cCGGCU----CUCGCUgCUACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 128564 0.66 0.999685
Target:  5'- uGGCaCaAGAGCcgGACGAUGGggGu---- -3'
miRNA:   3'- -CCG-GcUCUCG--CUGCUACCuuUuaaac -5'
33309 3' -48.1 NC_007605.1 + 129250 0.69 0.996631
Target:  5'- gGGCCGAGcacAG-GGCGGUGGAcagcagUUGg -3'
miRNA:   3'- -CCGGCUC---UCgCUGCUACCUuuua--AAC- -5'
33309 3' -48.1 NC_007605.1 + 133138 0.66 0.999604
Target:  5'- aGGCCGGuGGUGGaGGUGGGGAGggucuUUUGg -3'
miRNA:   3'- -CCGGCUcUCGCUgCUACCUUUU-----AAAC- -5'
33309 3' -48.1 NC_007605.1 + 133984 0.66 0.999733
Target:  5'- cGGCCGcgcugaacgugcccGGGGCGGCGGgucgGGAc------ -3'
miRNA:   3'- -CCGGC--------------UCUCGCUGCUa---CCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 136807 0.74 0.941469
Target:  5'- aGGCCGgaggGGGGUGugGGUGGggGu---- -3'
miRNA:   3'- -CCGGC----UCUCGCugCUACCuuUuaaac -5'
33309 3' -48.1 NC_007605.1 + 139464 0.68 0.998328
Target:  5'- gGGgaGGGGGgGugGGUacgGGAGAGUUUGg -3'
miRNA:   3'- -CCggCUCUCgCugCUA---CCUUUUAAAC- -5'
33309 3' -48.1 NC_007605.1 + 152466 0.67 0.998859
Target:  5'- -cCCGGGGGCcAUGGUGGAGAGc--- -3'
miRNA:   3'- ccGGCUCUCGcUGCUACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 154463 0.68 0.998615
Target:  5'- aGGCCGAGGGC-AUGGgcaGGAuaAAGUUUu -3'
miRNA:   3'- -CCGGCUCUCGcUGCUa--CCU--UUUAAAc -5'
33309 3' -48.1 NC_007605.1 + 156125 0.73 0.954781
Target:  5'- uGGUgGGGGGUGACGAggaUGGAAAGg--- -3'
miRNA:   3'- -CCGgCUCUCGCUGCU---ACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 157465 0.77 0.832108
Target:  5'- gGGCUGGGGGCGAUGGacugcUGGggGGUg-- -3'
miRNA:   3'- -CCGGCUCUCGCUGCU-----ACCuuUUAaac -5'
33309 3' -48.1 NC_007605.1 + 159739 0.7 0.992735
Target:  5'- gGGCCGAG-GCGAgGA-GGAGGc---- -3'
miRNA:   3'- -CCGGCUCuCGCUgCUaCCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 161506 0.68 0.998328
Target:  5'- gGGCCG-GGGCGugGAcaGGAAc----- -3'
miRNA:   3'- -CCGGCuCUCGCugCUa-CCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 164007 0.66 0.999713
Target:  5'- gGGCCGGGucucgaggcccucuGUGGCGAgaccagGGAGGuGUUUGg -3'
miRNA:   3'- -CCGGCUCu-------------CGCUGCUa-----CCUUU-UAAAC- -5'
33309 3' -48.1 NC_007605.1 + 168476 0.67 0.999065
Target:  5'- -uCCaGAGAGCGAUGAgcaGGAGGGUg-- -3'
miRNA:   3'- ccGG-CUCUCGCUGCUa--CCUUUUAaac -5'
33309 3' -48.1 NC_007605.1 + 169559 0.66 0.999849
Target:  5'- cGGCgGGcGGGCGGCGggGGGu------ -3'
miRNA:   3'- -CCGgCU-CUCGCUGCuaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 169728 0.71 0.984046
Target:  5'- aGCgGGGGGCGGCGcgGGAGc----- -3'
miRNA:   3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 170096 0.66 0.999849
Target:  5'- cGGCgGGcGGGCGGCGggGGGu------ -3'
miRNA:   3'- -CCGgCU-CUCGCUGCuaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 170266 0.71 0.984046
Target:  5'- aGCgGGGGGCGGCGcgGGAGc----- -3'
miRNA:   3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.