miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 3' -48.1 NC_007605.1 + 154463 0.68 0.998615
Target:  5'- aGGCCGAGGGC-AUGGgcaGGAuaAAGUUUu -3'
miRNA:   3'- -CCGGCUCUCGcUGCUa--CCU--UUUAAAc -5'
33309 3' -48.1 NC_007605.1 + 50158 0.69 0.996036
Target:  5'- aGCUGGGAgGCGGCgGAUGGggGu---- -3'
miRNA:   3'- cCGGCUCU-CGCUG-CUACCuuUuaaac -5'
33309 3' -48.1 NC_007605.1 + 84156 0.69 0.996036
Target:  5'- aGCUGAaAGCGACGA-GGAGGAa--- -3'
miRNA:   3'- cCGGCUcUCGCUGCUaCCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 129250 0.69 0.996631
Target:  5'- gGGCCGAGcacAG-GGCGGUGGAcagcagUUGg -3'
miRNA:   3'- -CCGGCUC---UCgCUGCUACCUuuua--AAC- -5'
33309 3' -48.1 NC_007605.1 + 97418 0.68 0.997602
Target:  5'- cGCgGAGGGUGAUGAcGGAGAu---- -3'
miRNA:   3'- cCGgCUCUCGCUGCUaCCUUUuaaac -5'
33309 3' -48.1 NC_007605.1 + 49883 0.68 0.997992
Target:  5'- -uCCG-GGGCGGCGGUGGAu------ -3'
miRNA:   3'- ccGGCuCUCGCUGCUACCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 139464 0.68 0.998328
Target:  5'- gGGgaGGGGGgGugGGUacgGGAGAGUUUGg -3'
miRNA:   3'- -CCggCUCUCgCugCUA---CCUUUUAAAC- -5'
33309 3' -48.1 NC_007605.1 + 99030 0.68 0.998328
Target:  5'- --gCGAGAGCGACGA-GGAu------ -3'
miRNA:   3'- ccgGCUCUCGCUGCUaCCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 45556 0.68 0.998615
Target:  5'- uGGCCGGGgacuggccGGUGAgGAUGGAu------ -3'
miRNA:   3'- -CCGGCUC--------UCGCUgCUACCUuuuaaac -5'
33309 3' -48.1 NC_007605.1 + 77505 0.7 0.992735
Target:  5'- gGGCCuGGGGCGACGuugcauuuUGGggGGgcgUGc -3'
miRNA:   3'- -CCGGcUCUCGCUGCu-------ACCuuUUaa-AC- -5'
33309 3' -48.1 NC_007605.1 + 52577 0.71 0.98754
Target:  5'- aGGCCGAGuccuGCGuagaACGAUGGGGc----- -3'
miRNA:   3'- -CCGGCUCu---CGC----UGCUACCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 171326 0.71 0.984046
Target:  5'- aGCgGGGGGCGGCGcgGGAGc----- -3'
miRNA:   3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 157465 0.77 0.832108
Target:  5'- gGGCUGGGGGCGAUGGacugcUGGggGGUg-- -3'
miRNA:   3'- -CCGGCUCUCGCUGCU-----ACCuuUUAaac -5'
33309 3' -48.1 NC_007605.1 + 58173 0.76 0.865198
Target:  5'- aGGCCG-GAGaCGACGgcGGGGAGUUg- -3'
miRNA:   3'- -CCGGCuCUC-GCUGCuaCCUUUUAAac -5'
33309 3' -48.1 NC_007605.1 + 40295 0.76 0.879666
Target:  5'- cGGCCGAGccaccaggggcccGGCGGgGGUGGggGGUg-- -3'
miRNA:   3'- -CCGGCUC-------------UCGCUgCUACCuuUUAaac -5'
33309 3' -48.1 NC_007605.1 + 63096 0.75 0.920126
Target:  5'- cGCCGGGGGUGGCaGUGGAGGGg--- -3'
miRNA:   3'- cCGGCUCUCGCUGcUACCUUUUaaac -5'
33309 3' -48.1 NC_007605.1 + 64487 0.71 0.981833
Target:  5'- aGGCCggagauuGAGAGUGAC-AUGGAGGuGUUUGa -3'
miRNA:   3'- -CCGG-------CUCUCGCUGcUACCUUU-UAAAC- -5'
33309 3' -48.1 NC_007605.1 + 169728 0.71 0.984046
Target:  5'- aGCgGGGGGCGGCGcgGGAGc----- -3'
miRNA:   3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 170266 0.71 0.984046
Target:  5'- aGCgGGGGGCGGCGcgGGAGc----- -3'
miRNA:   3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5'
33309 3' -48.1 NC_007605.1 + 170788 0.71 0.984046
Target:  5'- aGCgGGGGGCGGCGcgGGAGc----- -3'
miRNA:   3'- cCGgCUCUCGCUGCuaCCUUuuaaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.