miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 5' -58.6 NC_007605.1 + 63371 0.66 0.836423
Target:  5'- cCGCA-AC-CCUGGCUGACCUGgUCcCg -3'
miRNA:   3'- -GCGUcUGcGGACUGGCUGGACgAGaG- -5'
33309 5' -58.6 NC_007605.1 + 168202 0.66 0.833998
Target:  5'- gGCAGACaccaCCUGcucgugaguggaGCCGGCgacggacccccacuCUGCUCUCa -3'
miRNA:   3'- gCGUCUGc---GGAC------------UGGCUG--------------GACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 163194 0.66 0.828279
Target:  5'- --gGGACcCCUGccGCCGAcCCUGCUuCUCg -3'
miRNA:   3'- gcgUCUGcGGAC--UGGCU-GGACGA-GAG- -5'
33309 5' -58.6 NC_007605.1 + 103484 0.66 0.828279
Target:  5'- aGCAGuCGCCUGGCCaucuacaucgagGACCUcGgUCg- -3'
miRNA:   3'- gCGUCuGCGGACUGG------------CUGGA-CgAGag -5'
33309 5' -58.6 NC_007605.1 + 64335 0.66 0.819966
Target:  5'- aGCAGGCGCCcGGCCagGACaucaGC-CUCg -3'
miRNA:   3'- gCGUCUGCGGaCUGG--CUGga--CGaGAG- -5'
33309 5' -58.6 NC_007605.1 + 134362 0.66 0.819126
Target:  5'- uGUAGACGCCgggUGGCCG-CCUcggccagguuggcGgUCUCg -3'
miRNA:   3'- gCGUCUGCGG---ACUGGCuGGA-------------CgAGAG- -5'
33309 5' -58.6 NC_007605.1 + 53994 0.66 0.819126
Target:  5'- uCGUGGGCcuucgccaucaggGUCUGGCUcucccgGACCUGCUCUUc -3'
miRNA:   3'- -GCGUCUG-------------CGGACUGG------CUGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 147260 0.66 0.811489
Target:  5'- uGCGGACGCCUGuguuuagucuauGCCaauguuuACCUGC-CUUg -3'
miRNA:   3'- gCGUCUGCGGAC------------UGGc------UGGACGaGAG- -5'
33309 5' -58.6 NC_007605.1 + 157817 0.66 0.811489
Target:  5'- aGCGGGCaGUa-GGCUGuCCUGUUCUCg -3'
miRNA:   3'- gCGUCUG-CGgaCUGGCuGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 166101 0.66 0.811489
Target:  5'- aGCAG-CGaCUGcaaaACCGGCCugaaaUGCUCUCu -3'
miRNA:   3'- gCGUCuGCgGAC----UGGCUGG-----ACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 61728 0.67 0.794077
Target:  5'- aGCAGAa-CCgUGGCC-ACCUGCUCg- -3'
miRNA:   3'- gCGUCUgcGG-ACUGGcUGGACGAGag -5'
33309 5' -58.6 NC_007605.1 + 156589 0.67 0.794077
Target:  5'- uGCAGAUGCUcuaccccggGAUCGACgaGCUCg- -3'
miRNA:   3'- gCGUCUGCGGa--------CUGGCUGgaCGAGag -5'
33309 5' -58.6 NC_007605.1 + 91740 0.67 0.794077
Target:  5'- cCGCAGGCGCggGGCCucGGCCcugGC-CUCu -3'
miRNA:   3'- -GCGUCUGCGgaCUGG--CUGGa--CGaGAG- -5'
33309 5' -58.6 NC_007605.1 + 152695 0.67 0.793191
Target:  5'- uGCAGACaccacccaGUCUGGCUcuGACCagcaagaUGCUCUCc -3'
miRNA:   3'- gCGUCUG--------CGGACUGG--CUGG-------ACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 3000 0.67 0.785157
Target:  5'- uGCAGACgGCCc--UCGAgCUGUUCUCg -3'
miRNA:   3'- gCGUCUG-CGGacuGGCUgGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 164192 0.67 0.784258
Target:  5'- aCGCGGGCcacagguGCCUGACgGugCcGCUCc- -3'
miRNA:   3'- -GCGUCUG-------CGGACUGgCugGaCGAGag -5'
33309 5' -58.6 NC_007605.1 + 4911 0.67 0.776106
Target:  5'- uGcCGGAUGCCUGuGCCGACgggUGUUCUUu -3'
miRNA:   3'- gC-GUCUGCGGAC-UGGCUGg--ACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 2406 0.67 0.776106
Target:  5'- gGCAGACaG-CUGGCCGACgaGCUaaagaUCg -3'
miRNA:   3'- gCGUCUG-CgGACUGGCUGgaCGAg----AG- -5'
33309 5' -58.6 NC_007605.1 + 45625 0.67 0.776106
Target:  5'- gGCAGGgGCCUGuacACCGcCCUGUgCUg -3'
miRNA:   3'- gCGUCUgCGGAC---UGGCuGGACGaGAg -5'
33309 5' -58.6 NC_007605.1 + 66891 0.67 0.766931
Target:  5'- aCGCAGAgGCCaucaUGGCCGAcgaggcCCUGCa--- -3'
miRNA:   3'- -GCGUCUgCGG----ACUGGCU------GGACGagag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.