miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 5' -58.6 NC_007605.1 + 56673 1.1 0.001577
Target:  5'- cCGCAGACGCCUGACCGACCUGCUCUCg -3'
miRNA:   3'- -GCGUCUGCGGACUGGCUGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 159477 0.75 0.31894
Target:  5'- cCGagaGGGCGCCgGACgGGCCggGCUCUCg -3'
miRNA:   3'- -GCg--UCUGCGGaCUGgCUGGa-CGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 64138 0.73 0.412783
Target:  5'- gGCuGAUGuCCUGGCCGggcGCCUGCUC-Ca -3'
miRNA:   3'- gCGuCUGC-GGACUGGC---UGGACGAGaG- -5'
33309 5' -58.6 NC_007605.1 + 125181 0.71 0.521854
Target:  5'- uGaCGGugGa-UG-CCGACCUGCUCUCg -3'
miRNA:   3'- gC-GUCugCggACuGGCUGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 133504 0.71 0.554844
Target:  5'- gCGCAGAgCGCCcucccguggaggggGACCuGACCUGCaugCUCu -3'
miRNA:   3'- -GCGUCU-GCGGa-------------CUGG-CUGGACGa--GAG- -5'
33309 5' -58.6 NC_007605.1 + 132100 0.7 0.590407
Target:  5'- aGgAGG-GCCUGGCCGGCCUuggGCUCg- -3'
miRNA:   3'- gCgUCUgCGGACUGGCUGGA---CGAGag -5'
33309 5' -58.6 NC_007605.1 + 73323 0.7 0.600365
Target:  5'- gGCAgGugGCCUGGCCGGCCaaGCa--- -3'
miRNA:   3'- gCGU-CugCGGACUGGCUGGa-CGagag -5'
33309 5' -58.6 NC_007605.1 + 105396 0.68 0.699983
Target:  5'- aCGCGGcCGCUgaccuagGACUGACCUGggCUUa -3'
miRNA:   3'- -GCGUCuGCGGa------CUGGCUGGACgaGAG- -5'
33309 5' -58.6 NC_007605.1 + 53893 0.68 0.729173
Target:  5'- gCGCGGGUGCCUGGCUGaACCUaGCcgCUg -3'
miRNA:   3'- -GCGUCUGCGGACUGGC-UGGA-CGa-GAg -5'
33309 5' -58.6 NC_007605.1 + 4049 0.67 0.757642
Target:  5'- aCGCGcGugGCCUGggcgugaaGCUGACCUuugGCUCg- -3'
miRNA:   3'- -GCGU-CugCGGAC--------UGGCUGGA---CGAGag -5'
33309 5' -58.6 NC_007605.1 + 160986 0.67 0.766931
Target:  5'- gGCAGACGCaagcgccguCUGGCC-ACC-GUUCUCc -3'
miRNA:   3'- gCGUCUGCG---------GACUGGcUGGaCGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 132393 0.67 0.766931
Target:  5'- uCGcCAGcCGCCgggcgGGCCGGCCUcCUUUCc -3'
miRNA:   3'- -GC-GUCuGCGGa----CUGGCUGGAcGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 45490 0.67 0.766931
Target:  5'- gGUAcGugGCagggGACgGACCUGCUCg- -3'
miRNA:   3'- gCGU-CugCGga--CUGgCUGGACGAGag -5'
33309 5' -58.6 NC_007605.1 + 66891 0.67 0.766931
Target:  5'- aCGCAGAgGCCaucaUGGCCGAcgaggcCCUGCa--- -3'
miRNA:   3'- -GCGUCUgCGG----ACUGGCU------GGACGagag -5'
33309 5' -58.6 NC_007605.1 + 45625 0.67 0.776106
Target:  5'- gGCAGGgGCCUGuacACCGcCCUGUgCUg -3'
miRNA:   3'- gCGUCUgCGGAC---UGGCuGGACGaGAg -5'
33309 5' -58.6 NC_007605.1 + 2406 0.67 0.776106
Target:  5'- gGCAGACaG-CUGGCCGACgaGCUaaagaUCg -3'
miRNA:   3'- gCGUCUG-CgGACUGGCUGgaCGAg----AG- -5'
33309 5' -58.6 NC_007605.1 + 4911 0.67 0.776106
Target:  5'- uGcCGGAUGCCUGuGCCGACgggUGUUCUUu -3'
miRNA:   3'- gC-GUCUGCGGAC-UGGCUGg--ACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 164192 0.67 0.784258
Target:  5'- aCGCGGGCcacagguGCCUGACgGugCcGCUCc- -3'
miRNA:   3'- -GCGUCUG-------CGGACUGgCugGaCGAGag -5'
33309 5' -58.6 NC_007605.1 + 3000 0.67 0.785157
Target:  5'- uGCAGACgGCCc--UCGAgCUGUUCUCg -3'
miRNA:   3'- gCGUCUG-CGGacuGGCUgGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 152695 0.67 0.793191
Target:  5'- uGCAGACaccacccaGUCUGGCUcuGACCagcaagaUGCUCUCc -3'
miRNA:   3'- gCGUCUG--------CGGACUGG--CUGG-------ACGAGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.