miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33309 5' -58.6 NC_007605.1 + 159477 0.75 0.31894
Target:  5'- cCGagaGGGCGCCgGACgGGCCggGCUCUCg -3'
miRNA:   3'- -GCg--UCUGCGGaCUGgCUGGa-CGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 63371 0.66 0.836423
Target:  5'- cCGCA-AC-CCUGGCUGACCUGgUCcCg -3'
miRNA:   3'- -GCGUcUGcGGACUGGCUGGACgAGaG- -5'
33309 5' -58.6 NC_007605.1 + 103484 0.66 0.828279
Target:  5'- aGCAGuCGCCUGGCCaucuacaucgagGACCUcGgUCg- -3'
miRNA:   3'- gCGUCuGCGGACUGG------------CUGGA-CgAGag -5'
33309 5' -58.6 NC_007605.1 + 53994 0.66 0.819126
Target:  5'- uCGUGGGCcuucgccaucaggGUCUGGCUcucccgGACCUGCUCUUc -3'
miRNA:   3'- -GCGUCUG-------------CGGACUGG------CUGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 147260 0.66 0.811489
Target:  5'- uGCGGACGCCUGuguuuagucuauGCCaauguuuACCUGC-CUUg -3'
miRNA:   3'- gCGUCUGCGGAC------------UGGc------UGGACGaGAG- -5'
33309 5' -58.6 NC_007605.1 + 157817 0.66 0.811489
Target:  5'- aGCGGGCaGUa-GGCUGuCCUGUUCUCg -3'
miRNA:   3'- gCGUCUG-CGgaCUGGCuGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 91740 0.67 0.794077
Target:  5'- cCGCAGGCGCggGGCCucGGCCcugGC-CUCu -3'
miRNA:   3'- -GCGUCUGCGgaCUGG--CUGGa--CGaGAG- -5'
33309 5' -58.6 NC_007605.1 + 61728 0.67 0.794077
Target:  5'- aGCAGAa-CCgUGGCC-ACCUGCUCg- -3'
miRNA:   3'- gCGUCUgcGG-ACUGGcUGGACGAGag -5'
33309 5' -58.6 NC_007605.1 + 3000 0.67 0.785157
Target:  5'- uGCAGACgGCCc--UCGAgCUGUUCUCg -3'
miRNA:   3'- gCGUCUG-CGGacuGGCUgGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 2406 0.67 0.776106
Target:  5'- gGCAGACaG-CUGGCCGACgaGCUaaagaUCg -3'
miRNA:   3'- gCGUCUG-CgGACUGGCUGgaCGAg----AG- -5'
33309 5' -58.6 NC_007605.1 + 64138 0.73 0.412783
Target:  5'- gGCuGAUGuCCUGGCCGggcGCCUGCUC-Ca -3'
miRNA:   3'- gCGuCUGC-GGACUGGC---UGGACGAGaG- -5'
33309 5' -58.6 NC_007605.1 + 73323 0.7 0.600365
Target:  5'- gGCAgGugGCCUGGCCGGCCaaGCa--- -3'
miRNA:   3'- gCGU-CugCGGACUGGCUGGa-CGagag -5'
33309 5' -58.6 NC_007605.1 + 4049 0.67 0.757642
Target:  5'- aCGCGcGugGCCUGggcgugaaGCUGACCUuugGCUCg- -3'
miRNA:   3'- -GCGU-CugCGGAC--------UGGCUGGA---CGAGag -5'
33309 5' -58.6 NC_007605.1 + 132393 0.67 0.766931
Target:  5'- uCGcCAGcCGCCgggcgGGCCGGCCUcCUUUCc -3'
miRNA:   3'- -GC-GUCuGCGGa----CUGGCUGGAcGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 66891 0.67 0.766931
Target:  5'- aCGCAGAgGCCaucaUGGCCGAcgaggcCCUGCa--- -3'
miRNA:   3'- -GCGUCUgCGG----ACUGGCU------GGACGagag -5'
33309 5' -58.6 NC_007605.1 + 4911 0.67 0.776106
Target:  5'- uGcCGGAUGCCUGuGCCGACgggUGUUCUUu -3'
miRNA:   3'- gC-GUCUGCGGAC-UGGCUGg--ACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 168202 0.66 0.833998
Target:  5'- gGCAGACaccaCCUGcucgugaguggaGCCGGCgacggacccccacuCUGCUCUCa -3'
miRNA:   3'- gCGUCUGc---GGAC------------UGGCUG--------------GACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 125181 0.71 0.521854
Target:  5'- uGaCGGugGa-UG-CCGACCUGCUCUCg -3'
miRNA:   3'- gC-GUCugCggACuGGCUGGACGAGAG- -5'
33309 5' -58.6 NC_007605.1 + 133504 0.71 0.554844
Target:  5'- gCGCAGAgCGCCcucccguggaggggGACCuGACCUGCaugCUCu -3'
miRNA:   3'- -GCGUCU-GCGGa-------------CUGG-CUGGACGa--GAG- -5'
33309 5' -58.6 NC_007605.1 + 132100 0.7 0.590407
Target:  5'- aGgAGG-GCCUGGCCGGCCUuggGCUCg- -3'
miRNA:   3'- gCgUCUgCGGACUGGCUGGA---CGAGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.