miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33310 3' -59.1 NC_007605.1 + 168802 0.66 0.823329
Target:  5'- -gGGGCCGUCG-Cg--GGCCCGGUg- -3'
miRNA:   3'- ugUCCGGUAGCaGaugCUGGGCCGga -5'
33310 3' -59.1 NC_007605.1 + 54446 0.66 0.823329
Target:  5'- gGCAucGGCCGcCGUCcuggcGCGAaagagggcCCCGGCCg -3'
miRNA:   3'- -UGU--CCGGUaGCAGa----UGCU--------GGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 61170 0.66 0.823329
Target:  5'- gGCuGGUCuccuUCGgCaGCGACCUGGCCc -3'
miRNA:   3'- -UGuCCGGu---AGCaGaUGCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 47976 0.66 0.814964
Target:  5'- -gGGGCUg--GUCUGUGACCUGGCCc -3'
miRNA:   3'- ugUCCGGuagCAGAUGCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 87635 0.66 0.80987
Target:  5'- gGCGGGCUccacggucacugaugAUUGUUcggaAgGGCCCGGCCUu -3'
miRNA:   3'- -UGUCCGG---------------UAGCAGa---UgCUGGGCCGGA- -5'
33310 3' -59.1 NC_007605.1 + 125304 0.66 0.806442
Target:  5'- uGCAGGCCAgggCGUaaaagaGACCCaGCUg -3'
miRNA:   3'- -UGUCCGGUa--GCAgaug--CUGGGcCGGa -5'
33310 3' -59.1 NC_007605.1 + 2528 0.66 0.797772
Target:  5'- --cGGCCucguGUCagcgGUCUcUGGCCCGGCCa -3'
miRNA:   3'- uguCCGG----UAG----CAGAuGCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 42226 0.66 0.797772
Target:  5'- aAUAGGCCAUCuugcUCUACaaGAUCUGGCa- -3'
miRNA:   3'- -UGUCCGGUAGc---AGAUG--CUGGGCCGga -5'
33310 3' -59.1 NC_007605.1 + 21597 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 105936 0.66 0.788959
Target:  5'- cGCGGuGCCGUCGg--GCGuccccACCaCGGCCg -3'
miRNA:   3'- -UGUC-CGGUAGCagaUGC-----UGG-GCCGGa -5'
33310 3' -59.1 NC_007605.1 + 91741 0.66 0.788959
Target:  5'- cGCAGGCgCGggGcCU-CGGCCCuGGCCUc -3'
miRNA:   3'- -UGUCCG-GUagCaGAuGCUGGG-CCGGA- -5'
33310 3' -59.1 NC_007605.1 + 12390 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 15459 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 33873 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 18528 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 27735 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 24666 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 30804 0.66 0.788959
Target:  5'- gGCuuGGCCGg-GUCUAaggUGGCCUGGCCc -3'
miRNA:   3'- -UGu-CCGGUagCAGAU---GCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 74740 0.67 0.783607
Target:  5'- -aAGGCCAUCGUUcuguuuagcccgccgUugGGgccuCCCGGUCUu -3'
miRNA:   3'- ugUCCGGUAGCAG---------------AugCU----GGGCCGGA- -5'
33310 3' -59.1 NC_007605.1 + 112218 0.67 0.770941
Target:  5'- -uGGGCCcUCuUCUACGGCCCcaGGUCc -3'
miRNA:   3'- ugUCCGGuAGcAGAUGCUGGG--CCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.