miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33310 3' -59.1 NC_007605.1 + 57096 1.06 0.002624
Target:  5'- aACAGGCCAUCGUCUACGACCCGGCCUc -3'
miRNA:   3'- -UGUCCGGUAGCAGAUGCUGGGCCGGA- -5'
33310 3' -59.1 NC_007605.1 + 50851 0.75 0.329048
Target:  5'- --cGGCCGUCGggCUGCGACCCcgugcgcccgugguGGCCg -3'
miRNA:   3'- uguCCGGUAGCa-GAUGCUGGG--------------CCGGa -5'
33310 3' -59.1 NC_007605.1 + 61484 0.74 0.376994
Target:  5'- cCGGGCuCGUCuGUCcACGGCCuCGGCCUc -3'
miRNA:   3'- uGUCCG-GUAG-CAGaUGCUGG-GCCGGA- -5'
33310 3' -59.1 NC_007605.1 + 58361 0.73 0.401423
Target:  5'- ---cGCCGUCGUCUccggccucuGCGGCCCcGGCCUc -3'
miRNA:   3'- ugucCGGUAGCAGA---------UGCUGGG-CCGGA- -5'
33310 3' -59.1 NC_007605.1 + 56479 0.7 0.566168
Target:  5'- aGCAGGUCGgucaggCGUCUGCGGgCC-GCCUc -3'
miRNA:   3'- -UGUCCGGUa-----GCAGAUGCUgGGcCGGA- -5'
33310 3' -59.1 NC_007605.1 + 59596 0.7 0.575989
Target:  5'- -aAGGCCAUCGgauaUCgacaccGCGGCCCGaGCCc -3'
miRNA:   3'- ugUCCGGUAGC----AGa-----UGCUGGGC-CGGa -5'
33310 3' -59.1 NC_007605.1 + 73420 0.7 0.585847
Target:  5'- cCGGGCCA-CGUCcACacugaGCCCGGCCc -3'
miRNA:   3'- uGUCCGGUaGCAGaUGc----UGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 51569 0.69 0.615587
Target:  5'- --cGGCCAUCGUg-AgGcCCCGGCCg -3'
miRNA:   3'- uguCCGGUAGCAgaUgCuGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 87693 0.69 0.655369
Target:  5'- uCAGGCCGaCGUCaaaaACGAgCCGcGCCUc -3'
miRNA:   3'- uGUCCGGUaGCAGa---UGCUgGGC-CGGA- -5'
33310 3' -59.1 NC_007605.1 + 58325 0.68 0.675184
Target:  5'- --cGGCCccggCcUCUGCGGCCCcGGCCUc -3'
miRNA:   3'- uguCCGGua--GcAGAUGCUGGG-CCGGA- -5'
33310 3' -59.1 NC_007605.1 + 161309 0.68 0.694867
Target:  5'- aGCAGGUUccUGUCcACGcCCCGGCCc -3'
miRNA:   3'- -UGUCCGGuaGCAGaUGCuGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 127148 0.68 0.714351
Target:  5'- aACAGGCCcUCGgagGCGAUUCGGUUg -3'
miRNA:   3'- -UGUCCGGuAGCagaUGCUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 52781 0.68 0.714351
Target:  5'- -uGGGCgcccCAUCGuUCUACgcagGACUCGGCCUg -3'
miRNA:   3'- ugUCCG----GUAGC-AGAUG----CUGGGCCGGA- -5'
33310 3' -59.1 NC_007605.1 + 101006 0.68 0.723998
Target:  5'- uGCGGGCCA-CGUCcACGuagguCgCGGCCc -3'
miRNA:   3'- -UGUCCGGUaGCAGaUGCu----GgGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 98146 0.67 0.730707
Target:  5'- uCAGGCCAcCGUCUACccagaggaggacauGugCaUGGCCUg -3'
miRNA:   3'- uGUCCGGUaGCAGAUG--------------CugG-GCCGGA- -5'
33310 3' -59.1 NC_007605.1 + 69113 0.67 0.73357
Target:  5'- gGCuGGCCAUCGagauugUUUACaucuGCCCGGCUa -3'
miRNA:   3'- -UGuCCGGUAGC------AGAUGc---UGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 54278 0.67 0.758975
Target:  5'- cCAGGCCAcgggggacuucuucUCGgagCUGCuGACCgaGGCCg -3'
miRNA:   3'- uGUCCGGU--------------AGCa--GAUG-CUGGg-CCGGa -5'
33310 3' -59.1 NC_007605.1 + 24464 0.67 0.764521
Target:  5'- cCGGGCCAggccaccuuaGACCCGGCCa -3'
miRNA:   3'- uGUCCGGUagcagaug--CUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 27533 0.67 0.764521
Target:  5'- cCGGGCCAggccaccuuaGACCCGGCCa -3'
miRNA:   3'- uGUCCGGUagcagaug--CUGGGCCGGa -5'
33310 3' -59.1 NC_007605.1 + 21395 0.67 0.764521
Target:  5'- cCGGGCCAggccaccuuaGACCCGGCCa -3'
miRNA:   3'- uGUCCGGUagcagaug--CUGGGCCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.