miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33310 5' -53.9 NC_007605.1 + 157599 0.66 0.961185
Target:  5'- uGAGGcGUCGGAGGCGgGAUGCg--GGGa -3'
miRNA:   3'- -CUUCaCGGUCUCCGU-CUACGgaaCUC- -5'
33310 5' -53.9 NC_007605.1 + 151058 0.66 0.961185
Target:  5'- uGggGUGCCggagAGAGGUAGAaagcggGCCcaUGAa -3'
miRNA:   3'- -CuuCACGG----UCUCCGUCUa-----CGGa-ACUc -5'
33310 5' -53.9 NC_007605.1 + 166221 0.66 0.957473
Target:  5'- aGAAGaGCCAGAaGCAGAUGgauaUUGGGa -3'
miRNA:   3'- -CUUCaCGGUCUcCGUCUACgg--AACUC- -5'
33310 5' -53.9 NC_007605.1 + 131668 0.66 0.953525
Target:  5'- ----gGCCu--GGCGGGUGUCUUGGGc -3'
miRNA:   3'- cuucaCGGucuCCGUCUACGGAACUC- -5'
33310 5' -53.9 NC_007605.1 + 55578 0.66 0.953525
Target:  5'- -uAGUGUCAcGuAGGCGGAUGUacgUGGGg -3'
miRNA:   3'- cuUCACGGU-C-UCCGUCUACGga-ACUC- -5'
33310 5' -53.9 NC_007605.1 + 15401 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 136812 0.66 0.944906
Target:  5'- aAAGUagGCCGGAGGgGGGUGUgggUGGGg -3'
miRNA:   3'- cUUCA--CGGUCUCCgUCUACGga-ACUC- -5'
33310 5' -53.9 NC_007605.1 + 33815 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 30746 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 18470 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 21539 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 24608 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 12332 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 27677 0.66 0.944906
Target:  5'- uGGGUGCagGGGGGCAGGcgGCCcuacUGGGg -3'
miRNA:   3'- cUUCACGg-UCUCCGUCUa-CGGa---ACUC- -5'
33310 5' -53.9 NC_007605.1 + 137234 0.66 0.943529
Target:  5'- --uGUGcCCGGGGGUGGAggcugcgccugagcUGCCUggUGAGa -3'
miRNA:   3'- cuuCAC-GGUCUCCGUCU--------------ACGGA--ACUC- -5'
33310 5' -53.9 NC_007605.1 + 128432 0.66 0.940229
Target:  5'- gGGAGUG-UAGAGGUggaacAGAUGCUgUUGAGg -3'
miRNA:   3'- -CUUCACgGUCUCCG-----UCUACGG-AACUC- -5'
33310 5' -53.9 NC_007605.1 + 157432 0.67 0.935302
Target:  5'- -uGGUGCCuggagcagaAGAGGCAGAacauggUGCUgaGAGa -3'
miRNA:   3'- cuUCACGG---------UCUCCGUCU------ACGGaaCUC- -5'
33310 5' -53.9 NC_007605.1 + 124373 0.67 0.928523
Target:  5'- aGGAGUGCUcca-GCAGAUGCCUcuugaacauggcaaUGAGg -3'
miRNA:   3'- -CUUCACGGucucCGUCUACGGA--------------ACUC- -5'
33310 5' -53.9 NC_007605.1 + 160180 0.67 0.924697
Target:  5'- cGggGcgGCCGGAGGCAGAggggGCgaccaGAGc -3'
miRNA:   3'- -CuuCa-CGGUCUCCGUCUa---CGgaa--CUC- -5'
33310 5' -53.9 NC_007605.1 + 72366 0.67 0.919019
Target:  5'- --uGUGCCAugcccGGGGCAGGaacuuugcgUGCCU-GAGg -3'
miRNA:   3'- cuuCACGGU-----CUCCGUCU---------ACGGAaCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.