miRNA display CGI


Results 1 - 20 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33311 3' -64 NC_007605.1 + 52177 0.66 0.590932
Target:  5'- cACCAUCCCCgucuccguuuuugaGGCgGCcgUGGCGGcGGCc -3'
miRNA:   3'- -UGGUAGGGGg-------------CCGgCG--ACUGUC-CCGa -5'
33311 3' -64 NC_007605.1 + 141851 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142156 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 141545 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 143073 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142971 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142870 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142768 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142666 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142054 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142564 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 143175 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 141749 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 141647 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142258 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142360 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142462 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 74079 0.66 0.587077
Target:  5'- cGCCGUCacguCCCUGGCCgaGCUGGgGGaGGUc -3'
miRNA:   3'- -UGGUAG----GGGGCCGG--CGACUgUC-CCGa -5'
33311 3' -64 NC_007605.1 + 143277 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 134791 0.66 0.587077
Target:  5'- uCCAggaUCUCCCGcGCCGCaaGCAuGGGCg -3'
miRNA:   3'- uGGU---AGGGGGC-CGGCGacUGU-CCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.