miRNA display CGI


Results 21 - 40 of 123 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33311 3' -64 NC_007605.1 + 141035 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142666 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142564 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 142258 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 141952 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 141545 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 141749 0.66 0.587077
Target:  5'- cCCGgugggCCaCCCGGCCGCcccccGAgcucCAGGGCc -3'
miRNA:   3'- uGGUa----GG-GGGCCGGCGa----CU----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 50861 0.66 0.577462
Target:  5'- cGCC-UCCCCaCGGCCGUc----GGGCUg -3'
miRNA:   3'- -UGGuAGGGG-GCCGGCGacuguCCCGA- -5'
33311 3' -64 NC_007605.1 + 77485 0.66 0.577462
Target:  5'- cGCCGUCUUuuGGCCaCUGGgggccUGGGGCg -3'
miRNA:   3'- -UGGUAGGGggCCGGcGACU-----GUCCCGa -5'
33311 3' -64 NC_007605.1 + 64883 0.66 0.577462
Target:  5'- cACCca-CCCCGGCuCGCUGAaAGaGGUa -3'
miRNA:   3'- -UGGuagGGGGCCG-GCGACUgUC-CCGa -5'
33311 3' -64 NC_007605.1 + 101415 0.66 0.567881
Target:  5'- gGCCAggUCCC-GCCGCUGGaguuccucUAGGGCg -3'
miRNA:   3'- -UGGUagGGGGcCGGCGACU--------GUCCCGa -5'
33311 3' -64 NC_007605.1 + 138726 0.66 0.558341
Target:  5'- uGCCcUCCCCCcgGGCCGaUGGCuGaGGCc -3'
miRNA:   3'- -UGGuAGGGGG--CCGGCgACUGuC-CCGa -5'
33311 3' -64 NC_007605.1 + 63005 0.66 0.548846
Target:  5'- aGCCA-CCCCUGGCagagGUgGACGGGGg- -3'
miRNA:   3'- -UGGUaGGGGGCCGg---CGaCUGUCCCga -5'
33311 3' -64 NC_007605.1 + 154448 0.66 0.548846
Target:  5'- aGCCGUCCCggucagaGGCCGagGGCAuGGGCa -3'
miRNA:   3'- -UGGUAGGGgg-----CCGGCgaCUGU-CCCGa -5'
33311 3' -64 NC_007605.1 + 129448 0.66 0.548846
Target:  5'- cACUGUaaaCCCCGGCCuugggguaGCcGACGGuGGCUa -3'
miRNA:   3'- -UGGUAg--GGGGCCGG--------CGaCUGUC-CCGA- -5'
33311 3' -64 NC_007605.1 + 170279 0.66 0.539403
Target:  5'- cGCCcgCCCgCCGuagcGCCGCUcugugcGGgGGGGCUg -3'
miRNA:   3'- -UGGuaGGG-GGC----CGGCGA------CUgUCCCGA- -5'
33311 3' -64 NC_007605.1 + 171339 0.66 0.539403
Target:  5'- cGCCcgCCCgCCGuagcGCCGCUcugugcGGgGGGGCUg -3'
miRNA:   3'- -UGGuaGGG-GGC----CGGCGA------CUgUCCCGA- -5'
33311 3' -64 NC_007605.1 + 170802 0.66 0.539403
Target:  5'- cGCCcgCCCgCCGuagcGCCGCUcugugcGGgGGGGCUg -3'
miRNA:   3'- -UGGuaGGG-GGC----CGGCGA------CUgUCCCGA- -5'
33311 3' -64 NC_007605.1 + 169742 0.66 0.539403
Target:  5'- cGCCcgCCCgCCGuagcGCCGCUcugugcGGgGGGGCUg -3'
miRNA:   3'- -UGGuaGGG-GGC----CGGCGA------CUgUCCCGA- -5'
33311 3' -64 NC_007605.1 + 171396 0.66 0.538461
Target:  5'- gUCGcgCCCCCGGCCGCgccaGCcaagcccccaaggGGGGCg -3'
miRNA:   3'- uGGUa-GGGGGCCGGCGac--UG-------------UCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.