miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33311 5' -57.1 NC_007605.1 + 134356 0.66 0.884196
Target:  5'- ---cCUCCAUCAgCUCUCUUuucccCGGGCu -3'
miRNA:   3'- uauaGGGGUAGUgGAGGGAA-----GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 135462 0.66 0.862455
Target:  5'- -cAUCCCCGcgCACCcccagUCCCauuaacauagCGGGCAc -3'
miRNA:   3'- uaUAGGGGUa-GUGG-----AGGGaa--------GCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 107304 0.66 0.862455
Target:  5'- --uUCCCCAggaCACCUUCUUguggUGGGUg -3'
miRNA:   3'- uauAGGGGUa--GUGGAGGGAa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 75144 0.66 0.854788
Target:  5'- ---cCCCCGUCcuugcaccGCCUCCCguggUGcGGCAg -3'
miRNA:   3'- uauaGGGGUAG--------UGGAGGGaa--GC-CCGU- -5'
33311 5' -57.1 NC_007605.1 + 57873 0.66 0.846921
Target:  5'- -cAUCUCC-UCGCCUCCCUUU--GCAa -3'
miRNA:   3'- uaUAGGGGuAGUGGAGGGAAGccCGU- -5'
33311 5' -57.1 NC_007605.1 + 100213 0.67 0.838861
Target:  5'- -cAUCCCagcaGUCACCUCCggaucccacguaCgccCGGGCAg -3'
miRNA:   3'- uaUAGGGg---UAGUGGAGG------------Gaa-GCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 12645 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 15714 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 18783 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 21852 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 31059 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 34127 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 27990 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 24921 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 28093 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 25024 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 15817 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 31161 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 18886 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 12748 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.