miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33311 5' -57.1 NC_007605.1 + 34230 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 100213 0.67 0.838861
Target:  5'- -cAUCCCagcaGUCACCUCCggaucccacguaCgccCGGGCAg -3'
miRNA:   3'- uaUAGGGg---UAGUGGAGG------------Gaa-GCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 151235 0.68 0.790489
Target:  5'- cUcgCCCaCAUCGCuCUCCCUggcuuuucccuaugCGGGCc -3'
miRNA:   3'- uAuaGGG-GUAGUG-GAGGGAa-------------GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 50871 0.68 0.777645
Target:  5'- --cUCCgCCAccCGCCUCCCcacggccgUCGGGCu -3'
miRNA:   3'- uauAGG-GGUa-GUGGAGGGa-------AGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 97611 0.69 0.720032
Target:  5'- -cAUCUCCGUCAUCaCCCUcCGcGGCAg -3'
miRNA:   3'- uaUAGGGGUAGUGGaGGGAaGC-CCGU- -5'
33311 5' -57.1 NC_007605.1 + 121235 0.69 0.710115
Target:  5'- --uUCCCCGcacucUCAgCCUCCUccCGGGCAc -3'
miRNA:   3'- uauAGGGGU-----AGU-GGAGGGaaGCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 95124 0.69 0.700132
Target:  5'- aGUAUgCCCCAUCGCUUCCCca-GcGGCc -3'
miRNA:   3'- -UAUA-GGGGUAGUGGAGGGaagC-CCGu -5'
33311 5' -57.1 NC_007605.1 + 106831 0.7 0.668864
Target:  5'- -gGUCCCCAUCACCgccauguUCCCcaaccUgGGGUAc -3'
miRNA:   3'- uaUAGGGGUAGUGG-------AGGGa----AgCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 57998 0.7 0.659721
Target:  5'- ---gCCCCAUCGCCcCCCUUCa-GCAg -3'
miRNA:   3'- uauaGGGGUAGUGGaGGGAAGccCGU- -5'
33311 5' -57.1 NC_007605.1 + 58333 0.71 0.595553
Target:  5'- -cGUCCCCGcCGCCUCCCcaUcacuggacacaagcUCGGGCc -3'
miRNA:   3'- uaUAGGGGUaGUGGAGGG--A--------------AGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 164026 0.74 0.416684
Target:  5'- -gGUCCCCAguguggcCACCUCCCUaagaGGGUAg -3'
miRNA:   3'- uaUAGGGGUa------GUGGAGGGAag--CCCGU- -5'
33311 5' -57.1 NC_007605.1 + 35450 0.76 0.350665
Target:  5'- -cGUCCCCG--GCCUCCCgcUCGGGUAa -3'
miRNA:   3'- uaUAGGGGUagUGGAGGGa-AGCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 57455 1.07 0.003188
Target:  5'- gAUAUCCCCAUCACCUCCCUUCGGGCAg -3'
miRNA:   3'- -UAUAGGGGUAGUGGAGGGAAGCCCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.