Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33311 | 5' | -57.1 | NC_007605.1 | + | 57455 | 1.07 | 0.003188 |
Target: 5'- gAUAUCCCCAUCACCUCCCUUCGGGCAg -3' miRNA: 3'- -UAUAGGGGUAGUGGAGGGAAGCCCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 35450 | 0.76 | 0.350665 |
Target: 5'- -cGUCCCCG--GCCUCCCgcUCGGGUAa -3' miRNA: 3'- uaUAGGGGUagUGGAGGGa-AGCCCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 164026 | 0.74 | 0.416684 |
Target: 5'- -gGUCCCCAguguggcCACCUCCCUaagaGGGUAg -3' miRNA: 3'- uaUAGGGGUa------GUGGAGGGAag--CCCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 58333 | 0.71 | 0.595553 |
Target: 5'- -cGUCCCCGcCGCCUCCCcaUcacuggacacaagcUCGGGCc -3' miRNA: 3'- uaUAGGGGUaGUGGAGGG--A--------------AGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 57998 | 0.7 | 0.659721 |
Target: 5'- ---gCCCCAUCGCCcCCCUUCa-GCAg -3' miRNA: 3'- uauaGGGGUAGUGGaGGGAAGccCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 106831 | 0.7 | 0.668864 |
Target: 5'- -gGUCCCCAUCACCgccauguUCCCcaaccUgGGGUAc -3' miRNA: 3'- uaUAGGGGUAGUGG-------AGGGa----AgCCCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 95124 | 0.69 | 0.700132 |
Target: 5'- aGUAUgCCCCAUCGCUUCCCca-GcGGCc -3' miRNA: 3'- -UAUA-GGGGUAGUGGAGGGaagC-CCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 121235 | 0.69 | 0.710115 |
Target: 5'- --uUCCCCGcacucUCAgCCUCCUccCGGGCAc -3' miRNA: 3'- uauAGGGGU-----AGU-GGAGGGaaGCCCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 97611 | 0.69 | 0.720032 |
Target: 5'- -cAUCUCCGUCAUCaCCCUcCGcGGCAg -3' miRNA: 3'- uaUAGGGGUAGUGGaGGGAaGC-CCGU- -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 50871 | 0.68 | 0.777645 |
Target: 5'- --cUCCgCCAccCGCCUCCCcacggccgUCGGGCu -3' miRNA: 3'- uauAGG-GGUa-GUGGAGGGa-------AGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 151235 | 0.68 | 0.790489 |
Target: 5'- cUcgCCCaCAUCGCuCUCCCUggcuuuucccuaugCGGGCc -3' miRNA: 3'- uAuaGGG-GUAGUG-GAGGGAa-------------GCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 34230 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 31161 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 28093 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 25024 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 21955 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 18886 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 12748 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 15817 | 0.67 | 0.79591 |
Target: 5'- -gAUCCCCcucCACUUCCC--CGGGCc -3' miRNA: 3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5' |
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33311 | 5' | -57.1 | NC_007605.1 | + | 34127 | 0.67 | 0.830613 |
Target: 5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3' miRNA: 3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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