miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33311 5' -57.1 NC_007605.1 + 12645 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 12748 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 15714 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 15817 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 18783 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 18886 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 21852 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 21955 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 24921 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 25024 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 27990 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 28093 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 31059 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 31161 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 34127 0.67 0.830613
Target:  5'- ---aCCCCAg-ACCUCCCagaccCGGGCu -3'
miRNA:   3'- uauaGGGGUagUGGAGGGaa---GCCCGu -5'
33311 5' -57.1 NC_007605.1 + 34230 0.67 0.79591
Target:  5'- -gAUCCCCcucCACUUCCC--CGGGCc -3'
miRNA:   3'- uaUAGGGGua-GUGGAGGGaaGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 35450 0.76 0.350665
Target:  5'- -cGUCCCCG--GCCUCCCgcUCGGGUAa -3'
miRNA:   3'- uaUAGGGGUagUGGAGGGa-AGCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 50871 0.68 0.777645
Target:  5'- --cUCCgCCAccCGCCUCCCcacggccgUCGGGCu -3'
miRNA:   3'- uauAGG-GGUa-GUGGAGGGa-------AGCCCGu -5'
33311 5' -57.1 NC_007605.1 + 57455 1.07 0.003188
Target:  5'- gAUAUCCCCAUCACCUCCCUUCGGGCAg -3'
miRNA:   3'- -UAUAGGGGUAGUGGAGGGAAGCCCGU- -5'
33311 5' -57.1 NC_007605.1 + 57873 0.66 0.846921
Target:  5'- -cAUCUCC-UCGCCUCCCUUU--GCAa -3'
miRNA:   3'- uaUAGGGGuAGUGGAGGGAAGccCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.