miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33312 3' -59.8 NC_007605.1 + 40399 0.66 0.801401
Target:  5'- uGGGgACCCCCuGCCagucgGcgCGGGGUCc -3'
miRNA:   3'- -CCCgUGGGGG-CGGgua--Ca-GUCUCAGu -5'
33312 3' -59.8 NC_007605.1 + 64153 0.66 0.792695
Target:  5'- cGGGCGCCUgcuccaCCGCCUuaaggCcGAGUCAg -3'
miRNA:   3'- -CCCGUGGG------GGCGGGuaca-GuCUCAGU- -5'
33312 3' -59.8 NC_007605.1 + 141890 0.66 0.783854
Target:  5'- cGGcCACCCCCGCCgGaG-CGGGG-CAg -3'
miRNA:   3'- cCC-GUGGGGGCGGgUaCaGUCUCaGU- -5'
33312 3' -59.8 NC_007605.1 + 144419 0.66 0.774885
Target:  5'- uGGGCccaACCCCCGCCUugggagccUGUaGGGGcCAa -3'
miRNA:   3'- -CCCG---UGGGGGCGGGu-------ACAgUCUCaGU- -5'
33312 3' -59.8 NC_007605.1 + 25935 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 16728 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 32073 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 35141 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 29004 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 22866 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 13659 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 100752 0.66 0.765797
Target:  5'- cGGCacGCCCCUGCCCGgcaGUCuuGAG-CGu -3'
miRNA:   3'- cCCG--UGGGGGCGGGUa--CAGu-CUCaGU- -5'
33312 3' -59.8 NC_007605.1 + 19797 0.66 0.765797
Target:  5'- uGGCGCCCuuGCCUGgaggCAGAGa-- -3'
miRNA:   3'- cCCGUGGGggCGGGUaca-GUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 73832 0.66 0.756598
Target:  5'- uGGGCAaaagccucggucUgCCCGCCCAUGccgaGGAGcCAa -3'
miRNA:   3'- -CCCGU------------GgGGGCGGGUACag--UCUCaGU- -5'
33312 3' -59.8 NC_007605.1 + 53950 0.66 0.756598
Target:  5'- gGGGCAUCUgCGaggCCGUG-CGGGGUCu -3'
miRNA:   3'- -CCCGUGGGgGCg--GGUACaGUCUCAGu -5'
33312 3' -59.8 NC_007605.1 + 162980 0.67 0.747296
Target:  5'- uGGCccACCCCaGCCCGaGaagCAGGGUCGg -3'
miRNA:   3'- cCCG--UGGGGgCGGGUaCa--GUCUCAGU- -5'
33312 3' -59.8 NC_007605.1 + 154421 0.67 0.7379
Target:  5'- gGGGCuggaugacggugGCCCCCugguagccGUCCcgGUCAGAGg-- -3'
miRNA:   3'- -CCCG------------UGGGGG--------CGGGuaCAGUCUCagu -5'
33312 3' -59.8 NC_007605.1 + 150912 0.67 0.7379
Target:  5'- uGGCACCaggCCUGgCCAUGUCAcGAGacgCAg -3'
miRNA:   3'- cCCGUGG---GGGCgGGUACAGU-CUCa--GU- -5'
33312 3' -59.8 NC_007605.1 + 71361 0.67 0.718857
Target:  5'- uGGGCGCUCuuGCuCCcgGgggCAGGuGUCGg -3'
miRNA:   3'- -CCCGUGGGggCG-GGuaCa--GUCU-CAGU- -5'
33312 3' -59.8 NC_007605.1 + 49445 0.67 0.718857
Target:  5'- cGGGUcauccgccACCCCCGUCCAg--CAGGcUCAg -3'
miRNA:   3'- -CCCG--------UGGGGGCGGGUacaGUCUcAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.