miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33312 5' -56 NC_007605.1 + 64354 0.66 0.935364
Target:  5'- cUAUGACA-CCUaucuGUAUGUGGGGcGCa -3'
miRNA:   3'- -GUGCUGUaGGAcgu-CAUGCACCCC-CG- -5'
33312 5' -56 NC_007605.1 + 164735 0.66 0.935364
Target:  5'- aCGCGGagcuggCCUGCAGgacagccgACaucGGGGGCa -3'
miRNA:   3'- -GUGCUgua---GGACGUCa-------UGca-CCCCCG- -5'
33312 5' -56 NC_007605.1 + 75703 0.66 0.930373
Target:  5'- --aGACGUCCagGCccacguccccggGGUAC-UGGGGGUg -3'
miRNA:   3'- gugCUGUAGGa-CG------------UCAUGcACCCCCG- -5'
33312 5' -56 NC_007605.1 + 151309 0.66 0.925149
Target:  5'- gCACgGGCcgCCgagggGCAGgcUGCGgccgcccagGGGGGCa -3'
miRNA:   3'- -GUG-CUGuaGGa----CGUC--AUGCa--------CCCCCG- -5'
33312 5' -56 NC_007605.1 + 133978 0.66 0.925149
Target:  5'- cCACGACggCCgcGCuGaACGUGcccGGGGCg -3'
miRNA:   3'- -GUGCUGuaGGa-CGuCaUGCAC---CCCCG- -5'
33312 5' -56 NC_007605.1 + 88539 0.66 0.924614
Target:  5'- gGCGGC-UCCUGguaucccUGGUAUGgagccugGGGGGCc -3'
miRNA:   3'- gUGCUGuAGGAC-------GUCAUGCa------CCCCCG- -5'
33312 5' -56 NC_007605.1 + 159994 0.66 0.919691
Target:  5'- aGCGuCG-CCUgGCccuGGUGCG-GGGGGCc -3'
miRNA:   3'- gUGCuGUaGGA-CG---UCAUGCaCCCCCG- -5'
33312 5' -56 NC_007605.1 + 49658 0.66 0.913999
Target:  5'- uGCGGCGgccugagCCUGCuGgACGgGGGuGGCg -3'
miRNA:   3'- gUGCUGUa------GGACGuCaUGCaCCC-CCG- -5'
33312 5' -56 NC_007605.1 + 171587 0.66 0.913999
Target:  5'- gGgGGCAUCggggggGguGUugGcGGGGGCa -3'
miRNA:   3'- gUgCUGUAGga----CguCAugCaCCCCCG- -5'
33312 5' -56 NC_007605.1 + 103277 0.66 0.908075
Target:  5'- aCGCGGC-UUCUGCcGcaacUGCGgcGGGGGCu -3'
miRNA:   3'- -GUGCUGuAGGACGuC----AUGCa-CCCCCG- -5'
33312 5' -56 NC_007605.1 + 151004 0.66 0.908075
Target:  5'- gGCGGCGUCC-GCGGgcCGaGGGGa- -3'
miRNA:   3'- gUGCUGUAGGaCGUCauGCaCCCCcg -5'
33312 5' -56 NC_007605.1 + 110562 0.67 0.90003
Target:  5'- gCugGGCAcaUCCcugaccccucggcgUGUGGcccCGUGGGGGCg -3'
miRNA:   3'- -GugCUGU--AGG--------------ACGUCau-GCACCCCCG- -5'
33312 5' -56 NC_007605.1 + 88578 0.67 0.894887
Target:  5'- gGCGGC-UCCUGguaucccUGGUAUGgagccuggGGGGGCg -3'
miRNA:   3'- gUGCUGuAGGAC-------GUCAUGCa-------CCCCCG- -5'
33312 5' -56 NC_007605.1 + 157433 0.67 0.888257
Target:  5'- gGCGGCGggggugcUCCcGCGGgccGCGgauggggcUGGGGGCg -3'
miRNA:   3'- gUGCUGU-------AGGaCGUCa--UGC--------ACCCCCG- -5'
33312 5' -56 NC_007605.1 + 153122 0.67 0.875055
Target:  5'- gGCGACGagCgggauaGCAGgACG-GGGGGCu -3'
miRNA:   3'- gUGCUGUagGa-----CGUCaUGCaCCCCCG- -5'
33312 5' -56 NC_007605.1 + 127471 0.68 0.852661
Target:  5'- aCACuugaGCAUCacgGCAGUGgaUGGGGGCu -3'
miRNA:   3'- -GUGc---UGUAGga-CGUCAUgcACCCCCG- -5'
33312 5' -56 NC_007605.1 + 39924 0.69 0.817543
Target:  5'- gGCGugGUCCgcuUGCucugcuggcccGGUACGccuggauugccggcUGGGGGCu -3'
miRNA:   3'- gUGCugUAGG---ACG-----------UCAUGC--------------ACCCCCG- -5'
33312 5' -56 NC_007605.1 + 57885 0.69 0.811522
Target:  5'- gGCGGCggCCggagGUGGgcuucuUGUGGGGGCu -3'
miRNA:   3'- gUGCUGuaGGa---CGUCau----GCACCCCCG- -5'
33312 5' -56 NC_007605.1 + 124789 0.69 0.811522
Target:  5'- --aGACcccgGUCgaGUacgcagAGUACGUGGGGGCu -3'
miRNA:   3'- gugCUG----UAGgaCG------UCAUGCACCCCCG- -5'
33312 5' -56 NC_007605.1 + 85420 0.69 0.802786
Target:  5'- gGCGGCA-CCUGaggaGGUgGCGUGGgaguGGGCg -3'
miRNA:   3'- gUGCUGUaGGACg---UCA-UGCACC----CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.