miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 3' -54.6 NC_007605.1 + 62316 0.66 0.942421
Target:  5'- gGGGGCGG-GGccGGCGGgggaGAGGGuGAAg -3'
miRNA:   3'- -CUCCGCCaCCa-UCGCCa---CUUCCuUUU- -5'
33313 3' -54.6 NC_007605.1 + 105281 0.66 0.942421
Target:  5'- uGAGGUGcca-UAGCGGUGAAGGGc-- -3'
miRNA:   3'- -CUCCGCcaccAUCGCCACUUCCUuuu -5'
33313 3' -54.6 NC_007605.1 + 136059 0.66 0.93715
Target:  5'- --uGCGGUGGUuuggGGUaugucugGGUGGAGGGAGg -3'
miRNA:   3'- cucCGCCACCA----UCG-------CCACUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 59674 0.66 0.932616
Target:  5'- -uGGCGG-GGgcGUuugucccacgGGUGAGGGGGAAu -3'
miRNA:   3'- cuCCGCCaCCauCG----------CCACUUCCUUUU- -5'
33313 3' -54.6 NC_007605.1 + 171596 0.66 0.932616
Target:  5'- gGGGGgGGUGuUGGCGGgggcaUGggGGGGu- -3'
miRNA:   3'- -CUCCgCCACcAUCGCC-----ACuuCCUUuu -5'
33313 3' -54.6 NC_007605.1 + 36544 0.66 0.932616
Target:  5'- --nGUGGUGGgAGUGGUGggGGc--- -3'
miRNA:   3'- cucCGCCACCaUCGCCACuuCCuuuu -5'
33313 3' -54.6 NC_007605.1 + 137355 0.66 0.927344
Target:  5'- --cGCGGUGGUGGCccucGGUGguGGGc-- -3'
miRNA:   3'- cucCGCCACCAUCG----CCACuuCCUuuu -5'
33313 3' -54.6 NC_007605.1 + 40158 0.67 0.921823
Target:  5'- aAGGCaGGgggGGgGGCaGUGAGGGAGGGg -3'
miRNA:   3'- cUCCG-CCa--CCaUCGcCACUUCCUUUU- -5'
33313 3' -54.6 NC_007605.1 + 137576 0.67 0.910039
Target:  5'- -uGG-GGUGGcUGGCGGgcUGggGGAGGc -3'
miRNA:   3'- cuCCgCCACC-AUCGCC--ACuuCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 117517 0.67 0.897277
Target:  5'- gGAGGUGaaGGUAGCcGUGGAGGGc-- -3'
miRNA:   3'- -CUCCGCcaCCAUCGcCACUUCCUuuu -5'
33313 3' -54.6 NC_007605.1 + 49885 0.67 0.897277
Target:  5'- cGGGGCGGcGGUGGauGagaGGAGGggGAu -3'
miRNA:   3'- -CUCCGCCaCCAUCgcCa--CUUCCuuUU- -5'
33313 3' -54.6 NC_007605.1 + 12260 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 24536 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 15329 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 18398 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 21467 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 27605 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 33743 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 30674 0.67 0.897277
Target:  5'- gGAGGCuGG-GGUGGCaG-GAGGGGAGc -3'
miRNA:   3'- -CUCCG-CCaCCAUCGcCaCUUCCUUUu -5'
33313 3' -54.6 NC_007605.1 + 64702 0.67 0.890536
Target:  5'- cGGGGUGG-GuGUAGgGGUGAcGGggGc -3'
miRNA:   3'- -CUCCGCCaC-CAUCgCCACUuCCuuUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.