miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 153438 0.66 0.758122
Target:  5'- --gCUCCCCCaugggGaCC-CUGCCuUCACGGa -3'
miRNA:   3'- uagGAGGGGGg----C-GGuGAUGG-AGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 39845 0.66 0.752608
Target:  5'- -cCCUCCCCCagggcguacccggcuUGCCugguucugggGCU-CCUCugGGg -3'
miRNA:   3'- uaGGAGGGGG---------------GCGG----------UGAuGGAGugCC- -5'
33313 5' -60.8 NC_007605.1 + 143384 0.66 0.748913
Target:  5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 61411 0.66 0.748913
Target:  5'- gGUCCgccgccgCCCCCacacCCACaGCCgUCGCGGc -3'
miRNA:   3'- -UAGGa------GGGGGgc--GGUGaUGG-AGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 40569 0.66 0.748913
Target:  5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 73789 0.66 0.73961
Target:  5'- cGUgCUCCCCUCGCUcCUggacagggGCUUUGCGGa -3'
miRNA:   3'- -UAgGAGGGGGGCGGuGA--------UGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 171352 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 170815 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 170292 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 169755 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 134575 0.66 0.73961
Target:  5'- -cCCUggggcgCCCCUCGCCcauGCUugCggCGCGGg -3'
miRNA:   3'- uaGGA------GGGGGGCGG---UGAugGa-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 163796 0.66 0.73961
Target:  5'- -aCCUCCCugguCUCGCCACagaggGCCUCGagaccCGGc -3'
miRNA:   3'- uaGGAGGG----GGGCGGUGa----UGGAGU-----GCC- -5'
33313 5' -60.8 NC_007605.1 + 57633 0.66 0.73961
Target:  5'- uUCCUCagcagcagCCCCCGCCAUcaGCCgCcCGGg -3'
miRNA:   3'- uAGGAG--------GGGGGCGGUGa-UGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 87794 0.66 0.720754
Target:  5'- ----gCCUCCUGCCGCgggGCCUCcugccGCGGg -3'
miRNA:   3'- uaggaGGGGGGCGGUGa--UGGAG-----UGCC- -5'
33313 5' -60.8 NC_007605.1 + 74444 0.66 0.711217
Target:  5'- -gCCUUCCCCUuCCuGCgcgGCCUCACGc -3'
miRNA:   3'- uaGGAGGGGGGcGG-UGa--UGGAGUGCc -5'
33313 5' -60.8 NC_007605.1 + 59376 0.66 0.709302
Target:  5'- cGUCCUCCCCgCC-CCACcGCCgaagaugaguaACGGc -3'
miRNA:   3'- -UAGGAGGGG-GGcGGUGaUGGag---------UGCC- -5'
33313 5' -60.8 NC_007605.1 + 62845 0.67 0.701618
Target:  5'- -cCCUCCgCUaCCGCCGCUGCUgUCACu- -3'
miRNA:   3'- uaGGAGG-GG-GGCGGUGAUGG-AGUGcc -5'
33313 5' -60.8 NC_007605.1 + 125606 0.67 0.701618
Target:  5'- gAUCC-CCCCCUGuCCGC--CCUUcaGCGGg -3'
miRNA:   3'- -UAGGaGGGGGGC-GGUGauGGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 40366 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143181 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.