miRNA display CGI


Results 41 - 60 of 86 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 131650 0.67 0.67253
Target:  5'- cUCCUUCCUCUgaGCCuugGCCUgGCGGg -3'
miRNA:   3'- uAGGAGGGGGG--CGGugaUGGAgUGCC- -5'
33313 5' -60.8 NC_007605.1 + 105330 0.67 0.662763
Target:  5'- -gCCUgCCCUCCGCCAUcaggcguuCC-CACGGg -3'
miRNA:   3'- uaGGA-GGGGGGCGGUGau------GGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 46352 0.67 0.690997
Target:  5'- aAUCUcgCCCCCCuaauugcGCCAuCUGCCUaCGCGa -3'
miRNA:   3'- -UAGGa-GGGGGG-------CGGU-GAUGGA-GUGCc -5'
33313 5' -60.8 NC_007605.1 + 136968 0.68 0.593188
Target:  5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3'
miRNA:   3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5'
33313 5' -60.8 NC_007605.1 + 101000 0.68 0.643169
Target:  5'- uUCCUCUCCCaCGCCGaggucaagacCUuCCUCACa- -3'
miRNA:   3'- uAGGAGGGGG-GCGGU----------GAuGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 37391 0.68 0.647092
Target:  5'- -cCCUCCCCCUGCUcuguccccgGCUcugGCCUUgagucuuagaggguuGCGGg -3'
miRNA:   3'- uaGGAGGGGGGCGG---------UGA---UGGAG---------------UGCC- -5'
33313 5' -60.8 NC_007605.1 + 159767 0.68 0.613735
Target:  5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3'
miRNA:   3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5'
33313 5' -60.8 NC_007605.1 + 132279 0.68 0.613735
Target:  5'- -aCCUgCCCCUgaGUCACUACCggUugGGg -3'
miRNA:   3'- uaGGAgGGGGG--CGGUGAUGGa-GugCC- -5'
33313 5' -60.8 NC_007605.1 + 96757 0.68 0.594164
Target:  5'- cUCCUCgaCCCCGgccuCCACUGCCUCcuCGa -3'
miRNA:   3'- uAGGAGg-GGGGC----GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 116692 0.68 0.60394
Target:  5'- -aCCUCCCaCCGCCACguagaCGCGGg -3'
miRNA:   3'- uaGGAGGGgGGCGGUGauggaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 56447 0.68 0.594164
Target:  5'- cUCCUUCCCCCGCCucCUgAUCUC-CGc -3'
miRNA:   3'- uAGGAGGGGGGCGGu-GA-UGGAGuGCc -5'
33313 5' -60.8 NC_007605.1 + 115235 0.68 0.594164
Target:  5'- -cCUUCCCCaCCGgCGCUGCC-C-CGGa -3'
miRNA:   3'- uaGGAGGGG-GGCgGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 63294 0.69 0.584414
Target:  5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3'
miRNA:   3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5'
33313 5' -60.8 NC_007605.1 + 169430 0.69 0.574696
Target:  5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3'
miRNA:   3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5'
33313 5' -60.8 NC_007605.1 + 44407 0.69 0.565015
Target:  5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3'
miRNA:   3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5'
33313 5' -60.8 NC_007605.1 + 96809 0.69 0.535302
Target:  5'- cGUCCUCUaCCCCGgcggccuCCACUACCUCcuCGa -3'
miRNA:   3'- -UAGGAGG-GGGGC-------GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 166224 0.69 0.574696
Target:  5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 52437 0.69 0.574696
Target:  5'- cGUCUUCCCCgUCGUUGCUGCC--GCGGg -3'
miRNA:   3'- -UAGGAGGGG-GGCGGUGAUGGagUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143852 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 41036 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.