Results 21 - 40 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33313 | 5' | -60.8 | NC_007605.1 | + | 87751 | 0.7 | 0.489547 |
Target: 5'- cUCCUgccguggggCCUCCUGCCGCgggGCCUCcugccGCGGg -3' miRNA: 3'- uAGGA---------GGGGGGCGGUGa--UGGAG-----UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 138588 | 0.7 | 0.48589 |
Target: 5'- -aCCUCCCCCgGCCuggugcaaaauguCUGCCUCAg-- -3' miRNA: 3'- uaGGAGGGGGgCGGu------------GAUGGAGUgcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 133738 | 0.7 | 0.526776 |
Target: 5'- -aCCagcagCgCCCCCuCC-CUGCCUCACGGg -3' miRNA: 3'- uaGGa----G-GGGGGcGGuGAUGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 105466 | 0.7 | 0.488632 |
Target: 5'- cGUCCUCCCCCCcucccucGCCGCcuuCC-CGCGu -3' miRNA: 3'- -UAGGAGGGGGG-------CGGUGau-GGaGUGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 44407 | 0.69 | 0.565015 |
Target: 5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3' miRNA: 3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 63294 | 0.69 | 0.584414 |
Target: 5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3' miRNA: 3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 96809 | 0.69 | 0.535302 |
Target: 5'- cGUCCUCUaCCCCGgcggccuCCACUACCUCcuCGa -3' miRNA: 3'- -UAGGAGG-GGGGC-------GGUGAUGGAGu-GCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 169430 | 0.69 | 0.574696 |
Target: 5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3' miRNA: 3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 76228 | 0.69 | 0.584414 |
Target: 5'- cUCUUCCUCgCCGCCACcugGCUUCugacCGGg -3' miRNA: 3'- uAGGAGGGG-GGCGGUGa--UGGAGu---GCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 159862 | 0.69 | 0.536252 |
Target: 5'- -cCCUCCCCCUGCCcCguugcACCgauagCAUGGc -3' miRNA: 3'- uaGGAGGGGGGCGGuGa----UGGa----GUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 41036 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3' miRNA: 3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 143852 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3' miRNA: 3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 52437 | 0.69 | 0.574696 |
Target: 5'- cGUCUUCCCCgUCGUUGCUGCC--GCGGg -3' miRNA: 3'- -UAGGAGGGG-GGCGGUGAUGGagUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 166224 | 0.69 | 0.574696 |
Target: 5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3' miRNA: 3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 159767 | 0.68 | 0.613735 |
Target: 5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3' miRNA: 3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 56447 | 0.68 | 0.594164 |
Target: 5'- cUCCUUCCCCCGCCucCUgAUCUC-CGc -3' miRNA: 3'- uAGGAGGGGGGCGGu-GA-UGGAGuGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 115235 | 0.68 | 0.594164 |
Target: 5'- -cCUUCCCCaCCGgCGCUGCC-C-CGGa -3' miRNA: 3'- uaGGAGGGG-GGCgGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 116692 | 0.68 | 0.60394 |
Target: 5'- -aCCUCCCaCCGCCACguagaCGCGGg -3' miRNA: 3'- uaGGAGGGgGGCGGUGauggaGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 132279 | 0.68 | 0.613735 |
Target: 5'- -aCCUgCCCCUgaGUCACUACCggUugGGg -3' miRNA: 3'- uaGGAgGGGGG--CGGUGAUGGa-GugCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 136968 | 0.68 | 0.593188 |
Target: 5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3' miRNA: 3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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