miRNA display CGI


Results 41 - 60 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 132279 0.68 0.613735
Target:  5'- -aCCUgCCCCUgaGUCACUACCggUugGGg -3'
miRNA:   3'- uaGGAgGGGGG--CGGUGAUGGa-GugCC- -5'
33313 5' -60.8 NC_007605.1 + 159767 0.68 0.613735
Target:  5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3'
miRNA:   3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5'
33313 5' -60.8 NC_007605.1 + 136968 0.68 0.593188
Target:  5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3'
miRNA:   3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5'
33313 5' -60.8 NC_007605.1 + 46352 0.67 0.690997
Target:  5'- aAUCUcgCCCCCCuaauugcGCCAuCUGCCUaCGCGa -3'
miRNA:   3'- -UAGGa-GGGGGG-------CGGU-GAUGGA-GUGCc -5'
33313 5' -60.8 NC_007605.1 + 16903 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 131650 0.67 0.67253
Target:  5'- cUCCUUCCUCUgaGCCuugGCCUgGCGGg -3'
miRNA:   3'- uAGGAGGGGGG--CGGugaUGGAgUGCC- -5'
33313 5' -60.8 NC_007605.1 + 13834 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 105330 0.67 0.662763
Target:  5'- -gCCUgCCCUCCGCCAUcaggcguuCC-CACGGg -3'
miRNA:   3'- uaGGA-GGGGGGCGGUGau------GGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 19971 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 151339 0.67 0.652974
Target:  5'- cUCCUaugcgCCCCCCGUgACggaGCUggggCACGGg -3'
miRNA:   3'- uAGGA-----GGGGGGCGgUGa--UGGa---GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 40366 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 45298 0.67 0.691965
Target:  5'- gGUCCgUCCCCUGCCACgUACCUaauaguagucCACa- -3'
miRNA:   3'- -UAGGaGGGGGGCGGUG-AUGGA----------GUGcc -5'
33313 5' -60.8 NC_007605.1 + 143181 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 62845 0.67 0.701618
Target:  5'- -cCCUCCgCUaCCGCCGCUGCUgUCACu- -3'
miRNA:   3'- uaGGAGG-GG-GGCGGUGAUGG-AGUGcc -5'
33313 5' -60.8 NC_007605.1 + 125606 0.67 0.701618
Target:  5'- gAUCC-CCCCCUGuCCGC--CCUUcaGCGGg -3'
miRNA:   3'- -UAGGaGGGGGGC-GGUGauGGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 32247 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 29178 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 26109 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 23040 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 47646 0.67 0.662763
Target:  5'- cAUgCUCCCCCCaCCACcgUCUCcCGGg -3'
miRNA:   3'- -UAgGAGGGGGGcGGUGauGGAGuGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.