Results 61 - 80 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33313 | 5' | -60.8 | NC_007605.1 | + | 23040 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 19971 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 16903 | 0.67 | 0.682266 |
Target: 5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3' miRNA: 3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 131650 | 0.67 | 0.67253 |
Target: 5'- cUCCUUCCUCUgaGCCuugGCCUgGCGGg -3' miRNA: 3'- uAGGAGGGGGG--CGGugaUGGAgUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 105330 | 0.67 | 0.662763 |
Target: 5'- -gCCUgCCCUCCGCCAUcaggcguuCC-CACGGg -3' miRNA: 3'- uaGGA-GGGGGGCGGUGau------GGaGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 40366 | 0.67 | 0.691965 |
Target: 5'- ----aCCCCgCGCCACccGCUUCAUGGg -3' miRNA: 3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 45298 | 0.67 | 0.691965 |
Target: 5'- gGUCCgUCCCCUGCCACgUACCUaauaguagucCACa- -3' miRNA: 3'- -UAGGaGGGGGGCGGUG-AUGGA----------GUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 143181 | 0.67 | 0.691965 |
Target: 5'- ----aCCCCgCGCCACccGCUUCAUGGg -3' miRNA: 3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 62845 | 0.67 | 0.701618 |
Target: 5'- -cCCUCCgCUaCCGCCGCUGCUgUCACu- -3' miRNA: 3'- uaGGAGG-GG-GGCGGUGAUGG-AGUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 125606 | 0.67 | 0.701618 |
Target: 5'- gAUCC-CCCCCUGuCCGC--CCUUcaGCGGg -3' miRNA: 3'- -UAGGaGGGGGGC-GGUGauGGAG--UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 57633 | 0.66 | 0.73961 |
Target: 5'- uUCCUCagcagcagCCCCCGCCAUcaGCCgCcCGGg -3' miRNA: 3'- uAGGAG--------GGGGGCGGUGa-UGGaGuGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 73789 | 0.66 | 0.73961 |
Target: 5'- cGUgCUCCCCUCGCUcCUggacagggGCUUUGCGGa -3' miRNA: 3'- -UAgGAGGGGGGCGGuGA--------UGGAGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 74444 | 0.66 | 0.711217 |
Target: 5'- -gCCUUCCCCUuCCuGCgcgGCCUCACGc -3' miRNA: 3'- uaGGAGGGGGGcGG-UGa--UGGAGUGCc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 59376 | 0.66 | 0.709302 |
Target: 5'- cGUCCUCCCCgCC-CCACcGCCgaagaugaguaACGGc -3' miRNA: 3'- -UAGGAGGGG-GGcGGUGaUGGag---------UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 153438 | 0.66 | 0.758122 |
Target: 5'- --gCUCCCCCaugggGaCC-CUGCCuUCACGGa -3' miRNA: 3'- uagGAGGGGGg----C-GGuGAUGG-AGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 39845 | 0.66 | 0.752608 |
Target: 5'- -cCCUCCCCCagggcguacccggcuUGCCugguucugggGCU-CCUCugGGg -3' miRNA: 3'- uaGGAGGGGG---------------GCGG----------UGAuGGAGugCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 61411 | 0.66 | 0.748913 |
Target: 5'- gGUCCgccgccgCCCCCacacCCACaGCCgUCGCGGc -3' miRNA: 3'- -UAGGa------GGGGGgc--GGUGaUGG-AGUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 163796 | 0.66 | 0.73961 |
Target: 5'- -aCCUCCCugguCUCGCCACagaggGCCUCGagaccCGGc -3' miRNA: 3'- uaGGAGGG----GGGCGGUGa----UGGAGU-----GCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 134575 | 0.66 | 0.73961 |
Target: 5'- -cCCUggggcgCCCCUCGCCcauGCUugCggCGCGGg -3' miRNA: 3'- uaGGA------GGGGGGCGG---UGAugGa-GUGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 40569 | 0.66 | 0.748913 |
Target: 5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3' miRNA: 3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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