miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 60568 0.97 0.008887
Target:  5'- cAUCCUCCCCCCGCCACUACUcCACGGa -3'
miRNA:   3'- -UAGGAGGGGGGCGGUGAUGGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 3460 0.74 0.298463
Target:  5'- gAUCUUCUCCCC-UCGCUGCCUCACu- -3'
miRNA:   3'- -UAGGAGGGGGGcGGUGAUGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 34597 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 31528 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 28459 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 25390 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 22321 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 19252 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 16183 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 13114 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 87874 0.74 0.318881
Target:  5'- uUCCgcugggCCUCCUGCCGCgggGCCUCACa- -3'
miRNA:   3'- uAGGa-----GGGGGGCGGUGa--UGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 102525 0.74 0.325917
Target:  5'- cUCUUCCCCCCgGCCAUcuuUGCCggaACGGu -3'
miRNA:   3'- uAGGAGGGGGG-CGGUG---AUGGag-UGCC- -5'
33313 5' -60.8 NC_007605.1 + 103726 0.72 0.394339
Target:  5'- -aUCUCCCCCgGUCGCg--CUCGCGGg -3'
miRNA:   3'- uaGGAGGGGGgCGGUGaugGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 50880 0.71 0.427593
Target:  5'- gAUUCggCCCUCCGCCACccGCCUCcccACGGc -3'
miRNA:   3'- -UAGGa-GGGGGGCGGUGa-UGGAG---UGCC- -5'
33313 5' -60.8 NC_007605.1 + 87825 0.71 0.453594
Target:  5'- cUCCUgccgcggggCCUCCUGCCGCgggGCCUCGCa- -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 116577 0.7 0.48043
Target:  5'- -cCCUCCCCCCGCgGgaGgCUCAauCGGc -3'
miRNA:   3'- uaGGAGGGGGGCGgUgaUgGAGU--GCC- -5'
33313 5' -60.8 NC_007605.1 + 138588 0.7 0.48589
Target:  5'- -aCCUCCCCCgGCCuggugcaaaauguCUGCCUCAg-- -3'
miRNA:   3'- uaGGAGGGGGgCGGu------------GAUGGAGUgcc -5'
33313 5' -60.8 NC_007605.1 + 105466 0.7 0.488632
Target:  5'- cGUCCUCCCCCCcucccucGCCGCcuuCC-CGCGu -3'
miRNA:   3'- -UAGGAGGGGGG-------CGGUGau-GGaGUGCc -5'
33313 5' -60.8 NC_007605.1 + 87751 0.7 0.489547
Target:  5'- cUCCUgccguggggCCUCCUGCCGCgggGCCUCcugccGCGGg -3'
miRNA:   3'- uAGGA---------GGGGGGCGGUGa--UGGAG-----UGCC- -5'
33313 5' -60.8 NC_007605.1 + 62800 0.7 0.489547
Target:  5'- gGUCCUCCgCCaccaCGCCuACUACCUacucCGGg -3'
miRNA:   3'- -UAGGAGG-GGg---GCGG-UGAUGGAgu--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.