miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 5586 0.7 0.498744
Target:  5'- --aUUCCCCCCGCCuuuggGC-ACCcCACGGg -3'
miRNA:   3'- uagGAGGGGGGCGG-----UGaUGGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 59844 0.7 0.498744
Target:  5'- uUCCgcaUCCuCCCCGCCAaaaaaCUCGCGGc -3'
miRNA:   3'- uAGG---AGG-GGGGCGGUgaug-GAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 137316 0.7 0.507086
Target:  5'- uGUCCUCCCgggguccagaguuCCCgGCUGCUcccGCCUCAgGGa -3'
miRNA:   3'- -UAGGAGGG-------------GGG-CGGUGA---UGGAGUgCC- -5'
33313 5' -60.8 NC_007605.1 + 133738 0.7 0.526776
Target:  5'- -aCCagcagCgCCCCCuCC-CUGCCUCACGGg -3'
miRNA:   3'- uaGGa----G-GGGGGcGGuGAUGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 96809 0.69 0.535302
Target:  5'- cGUCCUCUaCCCCGgcggccuCCACUACCUCcuCGa -3'
miRNA:   3'- -UAGGAGG-GGGGC-------GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 159862 0.69 0.536252
Target:  5'- -cCCUCCCCCUGCCcCguugcACCgauagCAUGGc -3'
miRNA:   3'- uaGGAGGGGGGCGGuGa----UGGa----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 44407 0.69 0.565015
Target:  5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3'
miRNA:   3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5'
33313 5' -60.8 NC_007605.1 + 169430 0.69 0.574696
Target:  5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3'
miRNA:   3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5'
33313 5' -60.8 NC_007605.1 + 52437 0.69 0.574696
Target:  5'- cGUCUUCCCCgUCGUUGCUGCC--GCGGg -3'
miRNA:   3'- -UAGGAGGGG-GGCGGUGAUGGagUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143852 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 41036 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 166224 0.69 0.574696
Target:  5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 63294 0.69 0.584414
Target:  5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3'
miRNA:   3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5'
33313 5' -60.8 NC_007605.1 + 76228 0.69 0.584414
Target:  5'- cUCUUCCUCgCCGCCACcugGCUUCugacCGGg -3'
miRNA:   3'- uAGGAGGGG-GGCGGUGa--UGGAGu---GCC- -5'
33313 5' -60.8 NC_007605.1 + 136968 0.68 0.593188
Target:  5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3'
miRNA:   3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5'
33313 5' -60.8 NC_007605.1 + 56447 0.68 0.594164
Target:  5'- cUCCUUCCCCCGCCucCUgAUCUC-CGc -3'
miRNA:   3'- uAGGAGGGGGGCGGu-GA-UGGAGuGCc -5'
33313 5' -60.8 NC_007605.1 + 96757 0.68 0.594164
Target:  5'- cUCCUCgaCCCCGgccuCCACUGCCUCcuCGa -3'
miRNA:   3'- uAGGAGg-GGGGC----GGUGAUGGAGu-GCc -5'
33313 5' -60.8 NC_007605.1 + 115235 0.68 0.594164
Target:  5'- -cCUUCCCCaCCGgCGCUGCC-C-CGGa -3'
miRNA:   3'- uaGGAGGGG-GGCgGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 116692 0.68 0.60394
Target:  5'- -aCCUCCCaCCGCCACguagaCGCGGg -3'
miRNA:   3'- uaGGAGGGgGGCGGUGauggaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 159767 0.68 0.613735
Target:  5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3'
miRNA:   3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.