miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 3460 0.74 0.298463
Target:  5'- gAUCUUCUCCCC-UCGCUGCCUCACu- -3'
miRNA:   3'- -UAGGAGGGGGGcGGUGAUGGAGUGcc -5'
33313 5' -60.8 NC_007605.1 + 5586 0.7 0.498744
Target:  5'- --aUUCCCCCCGCCuuuggGC-ACCcCACGGg -3'
miRNA:   3'- uagGAGGGGGGCGG-----UGaUGGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 13114 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 13834 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 16183 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 16903 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 19252 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 19971 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 22321 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 23040 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 25390 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 26109 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 28459 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 29178 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 31528 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 32247 0.67 0.682266
Target:  5'- -cCCUCCCgCCCcuguCCACUGCC-C-CGGu -3'
miRNA:   3'- uaGGAGGG-GGGc---GGUGAUGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 34597 0.74 0.298463
Target:  5'- cUCCUCCCCUCcaggcccgaGCCuCUcCCUCGCGGa -3'
miRNA:   3'- uAGGAGGGGGG---------CGGuGAuGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 37391 0.68 0.647092
Target:  5'- -cCCUCCCCCUGCUcuguccccgGCUcugGCCUUgagucuuagaggguuGCGGg -3'
miRNA:   3'- uaGGAGGGGGGCGG---------UGA---UGGAG---------------UGCC- -5'
33313 5' -60.8 NC_007605.1 + 39845 0.66 0.752608
Target:  5'- -cCCUCCCCCagggcguacccggcuUGCCugguucugggGCU-CCUCugGGg -3'
miRNA:   3'- uaGGAGGGGG---------------GCGG----------UGAuGGAGugCC- -5'
33313 5' -60.8 NC_007605.1 + 40366 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.