miRNA display CGI


Results 21 - 40 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 40569 0.66 0.748913
Target:  5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 41036 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 44407 0.69 0.565015
Target:  5'- cUCuCUCCCCCgGgCGCUGCCUuCGCc- -3'
miRNA:   3'- uAG-GAGGGGGgCgGUGAUGGA-GUGcc -5'
33313 5' -60.8 NC_007605.1 + 45298 0.67 0.691965
Target:  5'- gGUCCgUCCCCUGCCACgUACCUaauaguagucCACa- -3'
miRNA:   3'- -UAGGaGGGGGGCGGUG-AUGGA----------GUGcc -5'
33313 5' -60.8 NC_007605.1 + 46352 0.67 0.690997
Target:  5'- aAUCUcgCCCCCCuaauugcGCCAuCUGCCUaCGCGa -3'
miRNA:   3'- -UAGGa-GGGGGG-------CGGU-GAUGGA-GUGCc -5'
33313 5' -60.8 NC_007605.1 + 47646 0.67 0.662763
Target:  5'- cAUgCUCCCCCCaCCACcgUCUCcCGGg -3'
miRNA:   3'- -UAgGAGGGGGGcGGUGauGGAGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 50880 0.71 0.427593
Target:  5'- gAUUCggCCCUCCGCCACccGCCUCcccACGGc -3'
miRNA:   3'- -UAGGa-GGGGGGCGGUGa-UGGAG---UGCC- -5'
33313 5' -60.8 NC_007605.1 + 52437 0.69 0.574696
Target:  5'- cGUCUUCCCCgUCGUUGCUGCC--GCGGg -3'
miRNA:   3'- -UAGGAGGGG-GGCGGUGAUGGagUGCC- -5'
33313 5' -60.8 NC_007605.1 + 56447 0.68 0.594164
Target:  5'- cUCCUUCCCCCGCCucCUgAUCUC-CGc -3'
miRNA:   3'- uAGGAGGGGGGCGGu-GA-UGGAGuGCc -5'
33313 5' -60.8 NC_007605.1 + 57489 0.67 0.67253
Target:  5'- -aCCaUCCCCCgGCCGCUgacaggGCUggaACGGa -3'
miRNA:   3'- uaGG-AGGGGGgCGGUGA------UGGag-UGCC- -5'
33313 5' -60.8 NC_007605.1 + 57633 0.66 0.73961
Target:  5'- uUCCUCagcagcagCCCCCGCCAUcaGCCgCcCGGg -3'
miRNA:   3'- uAGGAG--------GGGGGCGGUGa-UGGaGuGCC- -5'
33313 5' -60.8 NC_007605.1 + 58383 0.67 0.67253
Target:  5'- aGUCCUgcaaagaccaaCUCCCCGCCGuCgucuccgGCCUCuGCGGc -3'
miRNA:   3'- -UAGGA-----------GGGGGGCGGU-Ga------UGGAG-UGCC- -5'
33313 5' -60.8 NC_007605.1 + 59376 0.66 0.709302
Target:  5'- cGUCCUCCCCgCC-CCACcGCCgaagaugaguaACGGc -3'
miRNA:   3'- -UAGGAGGGG-GGcGGUGaUGGag---------UGCC- -5'
33313 5' -60.8 NC_007605.1 + 59844 0.7 0.498744
Target:  5'- uUCCgcaUCCuCCCCGCCAaaaaaCUCGCGGc -3'
miRNA:   3'- uAGG---AGG-GGGGCGGUgaug-GAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 60568 0.97 0.008887
Target:  5'- cAUCCUCCCCCCGCCACUACUcCACGGa -3'
miRNA:   3'- -UAGGAGGGGGGCGGUGAUGGaGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 61411 0.66 0.748913
Target:  5'- gGUCCgccgccgCCCCCacacCCACaGCCgUCGCGGc -3'
miRNA:   3'- -UAGGa------GGGGGgc--GGUGaUGG-AGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 62800 0.7 0.489547
Target:  5'- gGUCCUCCgCCaccaCGCCuACUACCUacucCGGg -3'
miRNA:   3'- -UAGGAGG-GGg---GCGG-UGAUGGAgu--GCC- -5'
33313 5' -60.8 NC_007605.1 + 62845 0.67 0.701618
Target:  5'- -cCCUCCgCUaCCGCCGCUGCUgUCACu- -3'
miRNA:   3'- uaGGAGG-GG-GGCGGUGAUGG-AGUGcc -5'
33313 5' -60.8 NC_007605.1 + 63294 0.69 0.584414
Target:  5'- --gCUCCCCCCuCCACUGCCaccCcCGGc -3'
miRNA:   3'- uagGAGGGGGGcGGUGAUGGa--GuGCC- -5'
33313 5' -60.8 NC_007605.1 + 66580 0.67 0.682266
Target:  5'- -cCCUCCCCUgGgCC-CUugCUCAUGa -3'
miRNA:   3'- uaGGAGGGGGgC-GGuGAugGAGUGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.