miRNA display CGI


Results 61 - 80 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33313 5' -60.8 NC_007605.1 + 132279 0.68 0.613735
Target:  5'- -aCCUgCCCCUgaGUCACUACCggUugGGg -3'
miRNA:   3'- uaGGAgGGGGG--CGGUGAUGGa-GugCC- -5'
33313 5' -60.8 NC_007605.1 + 133738 0.7 0.526776
Target:  5'- -aCCagcagCgCCCCCuCC-CUGCCUCACGGg -3'
miRNA:   3'- uaGGa----G-GGGGGcGGuGAUGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 134575 0.66 0.73961
Target:  5'- -cCCUggggcgCCCCUCGCCcauGCUugCggCGCGGg -3'
miRNA:   3'- uaGGA------GGGGGGCGG---UGAugGa-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 136968 0.68 0.593188
Target:  5'- cGUCCUcccccgggaauagCCCCCCGCCuuCUucauCCUCcuCGGg -3'
miRNA:   3'- -UAGGA-------------GGGGGGCGGu-GAu---GGAGu-GCC- -5'
33313 5' -60.8 NC_007605.1 + 137316 0.7 0.507086
Target:  5'- uGUCCUCCCgggguccagaguuCCCgGCUGCUcccGCCUCAgGGa -3'
miRNA:   3'- -UAGGAGGG-------------GGG-CGGUGA---UGGAGUgCC- -5'
33313 5' -60.8 NC_007605.1 + 138588 0.7 0.48589
Target:  5'- -aCCUCCCCCgGCCuggugcaaaauguCUGCCUCAg-- -3'
miRNA:   3'- uaGGAGGGGGgCGGu------------GAUGGAGUgcc -5'
33313 5' -60.8 NC_007605.1 + 143181 0.67 0.691965
Target:  5'- ----aCCCCgCGCCACccGCUUCAUGGg -3'
miRNA:   3'- uaggaGGGGgGCGGUGa-UGGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143384 0.66 0.748913
Target:  5'- -gCCUCCCCCC-CCAUgaaGCggguggCGCGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGUGa--UGga----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 143852 0.69 0.574696
Target:  5'- -cCCUCCCCCCcCUACcccccccucCCUUACGGu -3'
miRNA:   3'- uaGGAGGGGGGcGGUGau-------GGAGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 151339 0.67 0.652974
Target:  5'- cUCCUaugcgCCCCCCGUgACggaGCUggggCACGGg -3'
miRNA:   3'- uAGGA-----GGGGGGCGgUGa--UGGa---GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 153438 0.66 0.758122
Target:  5'- --gCUCCCCCaugggGaCC-CUGCCuUCACGGa -3'
miRNA:   3'- uagGAGGGGGg----C-GGuGAUGG-AGUGCC- -5'
33313 5' -60.8 NC_007605.1 + 158796 0.67 0.691965
Target:  5'- -cCCgcaCCCCCCGCCACcacggugcagccUACCgcCACGc -3'
miRNA:   3'- uaGGa--GGGGGGCGGUG------------AUGGa-GUGCc -5'
33313 5' -60.8 NC_007605.1 + 159767 0.68 0.613735
Target:  5'- -gCCUUgCCCCCGCCAgCgccuCCUCGCaGGc -3'
miRNA:   3'- uaGGAG-GGGGGCGGU-Gau--GGAGUG-CC- -5'
33313 5' -60.8 NC_007605.1 + 159862 0.69 0.536252
Target:  5'- -cCCUCCCCCUGCCcCguugcACCgauagCAUGGc -3'
miRNA:   3'- uaGGAGGGGGGCGGuGa----UGGa----GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 161182 0.67 0.67253
Target:  5'- cGUCCUagaaaCCCUggCGaCCAUUGCCUCcaGCGGg -3'
miRNA:   3'- -UAGGAg----GGGG--GC-GGUGAUGGAG--UGCC- -5'
33313 5' -60.8 NC_007605.1 + 163796 0.66 0.73961
Target:  5'- -aCCUCCCugguCUCGCCACagaggGCCUCGagaccCGGc -3'
miRNA:   3'- uaGGAGGG----GGGCGGUGa----UGGAGU-----GCC- -5'
33313 5' -60.8 NC_007605.1 + 166224 0.69 0.574696
Target:  5'- -cCCUCCCCCU-CC-CUACuCUcCACGGg -3'
miRNA:   3'- uaGGAGGGGGGcGGuGAUG-GA-GUGCC- -5'
33313 5' -60.8 NC_007605.1 + 169430 0.69 0.574696
Target:  5'- -gCCUCCCgCCUGCCGCcaacgACCUCccaACGu -3'
miRNA:   3'- uaGGAGGG-GGGCGGUGa----UGGAG---UGCc -5'
33313 5' -60.8 NC_007605.1 + 169755 0.66 0.73961
Target:  5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3'
miRNA:   3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5'
33313 5' -60.8 NC_007605.1 + 169960 0.67 0.662763
Target:  5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3'
miRNA:   3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.