Results 81 - 86 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33313 | 5' | -60.8 | NC_007605.1 | + | 170292 | 0.66 | 0.73961 |
Target: 5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3' miRNA: 3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 170498 | 0.67 | 0.662763 |
Target: 5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3' miRNA: 3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 170815 | 0.66 | 0.73961 |
Target: 5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3' miRNA: 3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 171020 | 0.67 | 0.662763 |
Target: 5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3' miRNA: 3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 171352 | 0.66 | 0.73961 |
Target: 5'- -cCCgaCCCCCCGCCGCccGCC-CGCc- -3' miRNA: 3'- uaGGa-GGGGGGCGGUGa-UGGaGUGcc -5' |
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33313 | 5' | -60.8 | NC_007605.1 | + | 171558 | 0.67 | 0.662763 |
Target: 5'- uGUCCccgCCCCCUGUCAuuCUAcCCUCcaACGGc -3' miRNA: 3'- -UAGGa--GGGGGGCGGU--GAU-GGAG--UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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